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Report for CCDS50777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50777.1 Public Mus musculus 2 Spag4 23 108 98 CCDS HistoryNCBI Gene:245865Re-query CCDS DB by CCDS ID:50777.1Re-query CCDS DB by GeneID:245865See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038860.11 ENSMUSP00000036484.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038860.11Link to Ensembl Protein Viewer:ENSMUSP00000036484.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038860Re-query CCDS DB by Protein ID:ENSMUSP00000036484
Original member Current member NCBI NM_139151.4 NP_631890.3 Accepted alive Link to Nucleotide Sequence:NM_139151.4Link to Protein Sequence:NP_631890.3Re-query CCDS DB by Nucleotide ID:NM_139151Re-query CCDS DB by Protein ID:NP_631890Link to BLAST:NP_631890.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631890.3 443 Q9JJF2-1 443 100% 0 0

Chromosomal Locations for CCDS 50777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156065362 156065671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156066134 156066238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156066567 156066633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156066805 156066866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156067089 156067132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156067312 156067337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156067455 156067563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156067747 156067822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156067937 156068052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156068371 156068538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156069137 156069226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156069320 156069478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGCGGCGGAGCCCCCGCTCAGGCTCGGCCGCATCCTCTCATAATCACACACCCAACTTCTACAGCGAGA
ACAGCAATAGTTCCCACAGCGCGACTTCGGGGGACAGCAATGGGCGCCGGTCCGCTGGGCCGGAGCTCGG
GGAGCCCGAGGGCAGAAGGGCCCGGGGCTCGAGCTGTGGTGAGCCCGCCTTAAGCCCAGGAATGCCCGGA
GGAGACACATGGGCAGGAAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTG
GCGCGGCAACCGTGAGGGGCGGGGCCTCGGAACCGTCTGGATCTTCTGTAGTTTTGGAGGAACAACTCAA
CCTTCTCCCGATCCTGGATCTGAGGCAGGAGATGCCTACCCCGAGGGTGTCCAAGAGCTTCCTGAGCCTC
CTCTTTCAGGTGCTGAGCATGGTGTTATCCCTGGCAGTCGATGGGCTGGTCTGTGTGTGCAGGGAAATCT
GCTCCATCCGCTTCCTGTTCACTGCTGTGTCGCTCCTGAGCATCTTTCTGGCAGCACTCTGGTGGGGGCT
CCTGTACCTGATCCCTCCTTTGGAGAACGAACCTACGGAGATGCTGACTCTAAGCCAATACCACCACCGC
GTGCATTCCCAGGGCCAGCAACTGCAGCAGCTCCAGGCAGAACTGAATAAACTCCACAAGGAGGTGTCCA
GCGTTCGTGCAGCCCACAGTGAGAGAGTGGCCAAGCTCGTGTTCCAGAGGCTGAATGAAGACTTCGTGCG
CAAACCTGACTATGCACTGAGCTCTGTGGGAGCCTCCATCGACCTGGAGAAGACGTCCAGTGACTACGAG
GACCAGAACACTGCCTACTTCTGGAACCGCTTGAGCTTCTGGAACTATGCCCGCCCGCCTTCTGTCATAT
TGGAGCCAGATGTGTTCCCTGGAAATTGCTGGGCTTTTGAAGGTGATAAAGGCCAGGTGGTGATCCGACT
GCCAGGTCATGTGCAGTTAAGCGACATCACCCTGCAGCATCCTCCACCCACTGTGGCACACACCGGAGGG
GCCAGCAGCGCGCCTCGGGACTTTGCAGTCTATGGGCTCCAAGCTGATGACGAGACTGAAGTGTTCTTGG
GGAAATTCATCTTTGATGTGCAGAAATCTGAAATTCAGACTTTCCACCTCCAGAATGATCCTCCTTCTGC
CTTCCCCAAGGTGAAGATTCAGATTCTAAGCAACTGGGGCCATCCCCGCTTCACGTGCTTATATCGCGTC
CGTGCTCATGGTGTGCGGACCTCAGAGTGGGCAGACGATAATGCCACAGGGGTCACAGGGGGACCCCATT
AA

Translation (443 aa):
MRRSPRSGSAASSHNHTPNFYSENSNSSHSATSGDSNGRRSAGPELGEPEGRRARGSSCGEPALSPGMPG
GDTWAGSSRPKLAPRSHNGQTACGAATVRGGASEPSGSSVVLEEQLNLLPILDLRQEMPTPRVSKSFLSL
LFQVLSMVLSLAVDGLVCVCREICSIRFLFTAVSLLSIFLAALWWGLLYLIPPLENEPTEMLTLSQYHHR
VHSQGQQLQQLQAELNKLHKEVSSVRAAHSERVAKLVFQRLNEDFVRKPDYALSSVGASIDLEKTSSDYE
DQNTAYFWNRLSFWNYARPPSVILEPDVFPGNCWAFEGDKGQVVIRLPGHVQLSDITLQHPPPTVAHTGG
ASSAPRDFAVYGLQADDETEVFLGKFIFDVQKSEIQTFHLQNDPPSAFPKVKIQILSNWGHPRFTCLYRV
RAHGVRTSEWADDNATGVTGGPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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