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Report for CCDS50801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50801.1 Public Mus musculus 2 Stau1 23 108 98 CCDS HistoryNCBI Gene:20853Re-query CCDS DB by CCDS ID:50801.1Re-query CCDS DB by GeneID:20853See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50801.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109238.8 ENSMUSP00000104861.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109238.8Link to Ensembl Protein Viewer:ENSMUSP00000104861.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109238Re-query CCDS DB by Protein ID:ENSMUSP00000104861
Original member Current member NCBI NM_001109906.2 NP_001103376.1 Accepted alive Link to Nucleotide Sequence:NM_001109906.2Link to Protein Sequence:NP_001103376.1Re-query CCDS DB by Nucleotide ID:NM_001109906Re-query CCDS DB by Protein ID:NP_001103376Link to BLAST:NP_001103376.1

Chromosomal Locations for CCDS 50801.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 166949344 166949359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166949744 166949829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166950231 166950353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166950781 166951100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166951271 166951346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166952326 166952472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166953208 166953351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166954900 166955130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166960023 166960121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166963429 166963594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166964579 166964658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGTATAAGCCCGTGGACCCTCACTCTCGGATGCAGTCCACCTACAGCTATGGCATGCGTGGAGGTGCCT
ATCCCCCCAGATACTTTTACCCATTTCCAGTCCCACCTTTACTCTACCAAGTTGAGCTCTCCGTGGGCGG
ACAGCAGTTTAATGGGAAAGGAAAGATGAGACCACCCGTGAAACACGATGCCCCTGCCCGTGCGCTGAGG
ACTCTGCAGAGTGAACCCCTGCCAGAAAGGTTGGAGGTAAATGGAAGAGAAGCAGAGGAAGAAAACCTCA
ATAAATCGGAAATAAGCCAAGTGTTTGAAATTGCGCTGAAGCGGAATTTGCCTGTGAATTTTGAGTCTTT
CCTTCTGACACAGGTGGCCCGGGAGAGTGGCCCACCACACATGAAGAACTTTGTGACCAGGGTTTCAGTT
GGGGAATTTGTAGGGGAAGGAGAAGGGAAAAGCAAGAAGATCTCCAAGAAGAATGCGGCCAGGGCTGTTC
TGGAGCAGCTTAGGAGGCTGCCACCCCTCCCTGCTGTGGAGCGAGTGAAGCCCAGAATCAAGAAGAAAAG
TCAGCCCACCTGCAAGCTACAGACAGCCCCGGATTATGGCCAAGGGATGAATCCTATTAGTAGACTTGCA
CAGATCCAGCAGGCAAAAAAGGAGAAGGAGCCAGAGTACATGCTCCTTACAGAACGAGGTCTTCCACGTC
GCAGGGAGTTTGTGATGCAGGTAAAGGTTGGGCATCACACTGCAGAAGGAGTGGGTACCAATAAGAAGGT
GGCCAAGCGTAATGCTGCTGAGAACATGCTGGAGATCCTGGGGTTCAAAGTTCCCCAGGCGCAGCCTGCC
AAGCCAGCACTCAAATCAGAAGAGAAGACTCCAGTAAAGAAACCAGGAGACGGAAGGAAAGTAACGTTTT
TTGAACCTAGCCCTGGGGATGAAAATGGAACTAGTAACAAGGACGAGGAGTTCAGGATGCCTTATCTTAG
CCATCAGCAGCTGCCAGCTGGAATTCTCCCCATGGTGCCGGAAGTTGCCCAGGCTGTCGGGGTTAGTCAA
GGACACCACACCAAAGATTTCACCAGGGCAGCTCCAAATCCTGCCAAGGCAACGGTAACTGCCATGATAG
CCCGAGAGTTGTTGTACGGGGGCACCTCGCCCACAGCCGAGACCATTTTAAAGAGTAACATCTCTTCAGG
CCACGTACCCCATGGACCTCGCACTAGACCCTCTGAGCAACTGTACTACCTTTCCAGAGCCCAGGGATTC
CAGGTTGAATACAAAGATTTTCCCAAGAACAACAAGAACGAGTGTGTATCTCTCATCAACTGCTCCTCAC
AGCCGCCTCTCGTCAGTCATGGCATCGGCAAGGATGTGGAGTCCTGTCATGATATGGCTGCACTGAACAT
TTTAAAGCTGCTGTCTGAGTTGGACCAACAGAGCACAGAGATGCCAAGAACAGGAAATGGACCAGTTTCA
GCGTGCGGGAGGTGCTGA

Translation (495 aa):
MYKPVDPHSRMQSTYSYGMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGKGKMRPPVKHDAPARALR
TLQSEPLPERLEVNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKNFVTRVSV
GEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLA
QIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILGFKVPQAQPA
KPALKSEEKTPVKKPGDGRKVTFFEPSPGDENGTSNKDEEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQ
GHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKSNISSGHVPHGPRTRPSEQLYYLSRAQGF
QVEYKDFPKNNKNECVSLINCSSQPPLVSHGIGKDVESCHDMAALNILKLLSELDQQSTEMPRTGNGPVS
ACGRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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