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Report for CCDS50884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50884.1 Public Mus musculus 3 Phc3 23 108 98 CCDS HistoryNCBI Gene:241915Re-query CCDS DB by CCDS ID:50884.1Re-query CCDS DB by GeneID:241915See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108255.7 ENSMUSP00000103890.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108255.7Link to Ensembl Protein Viewer:ENSMUSP00000103890.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108255Re-query CCDS DB by Protein ID:ENSMUSP00000103890
Original member Current member EBI ENSMUST00000177992.7 ENSMUSP00000136820.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177992.7Link to Ensembl Protein Viewer:ENSMUSP00000136820.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177992Re-query CCDS DB by Protein ID:ENSMUSP00000136820
Original member Current member NCBI NM_001165955.1 NP_001159427.1 Accepted alive Link to Nucleotide Sequence:NM_001165955.1Link to Protein Sequence:NP_001159427.1Re-query CCDS DB by Nucleotide ID:NM_001165955Re-query CCDS DB by Protein ID:NP_001159427Link to BLAST:NP_001159427.1

Chromosomal Locations for CCDS 50884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 30907336 30907490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30914095 30914326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30914418 30914550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30916603 30916717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30922197 30922356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30929813 30930063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30931739 30931892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30936285 30937156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30942409 30942652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30950876 30951031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30958009 30958086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30961728 30961883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30965773 30965913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2847 nt):
ATGGATAGTGAGCCGAGCTCTGGAACATCCGTGTCAACAACAGCCAGCAGTACCACCACCACCACCATCA
CCACATCCTCCTCCCGAATGCAGCAGCCACAGATCTCTGTCTACAGCGGGTCAGACCGACATGCTGTTCA
GGTAATTCAGCAGGCCTTGCATCGGCCCCCCAGCTCGGCAGCTCAGTACCTGCAGCAGATGTACGCGGCT
CAGCAGCAGCACCTGATGCTGCACACGGCTGCTCTGCAGCAGCAGCACCTAAGCAGCTCGCAGCTCCAGA
GCCTTGCGGCTGTCCAGGCAAGTTTGTCCAGTGGAAGACCATCTACATCCCCCACAGGCAGTGTTACACA
ACAGTCAAGTATGTCCCAGACATCTATCCTGTCCGCTTCTCCTGCACCTGCTCAGCTGATGAACCGCTCC
CAGACGTCCAGTTCTACCAGCGGCAGTATTACCCAGCAGACTATGCTACTCGGGAGTACCTCTCCCACCC
TAACTGCCAGCCAAGCCCAGATGTATCTCCGAGCTCAGATGGTTCAGAATTTAACCTTACGCAGCCAGAA
GCTGGGTGTCTTATCTAGCTCACAGAATGGCTCACCAAAAAGCGCTGGTCAAACCCAGTCCTTGACAATT
TGCCATAATAAAACAACAGTGACCAGTTCTAAAATCAGCCAACGAGACCCTTCTCCAGAGAGCAAGAAGG
GAGGAAGCCCAGGTCTGGAATCTCGGAGCACGGCCGTCACTCGGACATCAAGCATCCACCAGTTAATAGC
ACCAGCTTCATATTCTCCAATTCAGCCTCATTCTCTAATCAAACATCAGCAGATTCCTCTTCATTCACCA
CCTCCTAAAGTTTCCCATCATCAGCTGCTATTACAACAGCAACAACAGCAAATTCAGCCAATCACCCTTC
AGAGTCCAAGTCAAGATCCACCCCCATCCCAGCACTGTATCCCACTCCCAAACCATGGCCTTTCTCCGGC
TCCCAGTAATGCCCAGCCGCAGCATTGCTCCCCAGTTCAGAGCCATCCTCCGCCTTTAACTGTGTCTCCC
AACCAGGCACAGTCCGCACAGCAGTCTGTAGTGGTGTCTCCTCCCCCCCCTCATTCCCCAAGTCAGTCTC
CTACTATAATTATCCATCCACAAGCACTTATCCAGCCACACCCTCTTGTGTCTTCAGCTCTTCAAACAGG
GCCAAATTTGCAGCAGGCTGCTGCTGATCAGGTACAGTCCACCGCACAGCTGAATCTTCCATCCCATCTT
CCACTTCCAGCATCCCCTGTTGTACACATTGGCCCTGTCCAGCAGTCTGCCTTGGTGTCCCCTGGTCAGC
AGATGGTGTCCCCAACATCACACCAGCAGTATTCAGCCCTACAGTCCTCTCCAATTCCCATCGCGACCCC
TCCACAGATGTCGGCATCTCCTCCAGCTCAGCTCCCACCACTGCCCTTGCAGTCTATGCAGTCTTTACAA
GTGCAGCCTGAAATTCTATCCCAGGGCCAGGTTTTGGTGCAGAATGCTTTGGTGTCAGAAGAGGAGCTAC
CTGCTGCAGAAGCTTTGGTCCAGTTGCCATTTCAGACTCTTCCTCCTCCACAGACTGTTGCGGTAAATCT
ACAAGTACAGCCGCCAGCACCTGTTGATCCACCAGTGGTTTATCAAGTAGAAGATGTGTGTGAGGAAGAA
ATGCCAGAGGAGTCCGATGAGTGTGCAAGGATGGACAGAACCCCCCCACCCCCCACCTTGTCTCCAGCAG
CTGTCACTGTGGGGAGGGGAGAGGACTTGACATCCGAACATCCTTTGTTAGAGCAAGTGGAGTTGCCTGC
TGTGGCCTCAGTCAGTGCTTCCGTGATCAAGTCTCCATCAGACCCCACCCATGCCTCTGCTCCTGCACCT
CCCCTCTTAATCCCTGCTGCCTCCACCAGGAGCAGCAGCACTTCTCTGGCCAGCAGCACTCCCAGCCTGG
AAAACAAGCCTCCACAGGCTATTGTGAAACCACAGATTTTGACCCACGTTATAGAAGGCTTTGTGATTCA
GGAGGGGCTGGAGCCGTTTCCTGTGAGTCGATCATCACTGCTGATAGAACAACCTGTGAAGAAGAGGCCT
CTCTTGGATAATCAGGTGGTAAACTCTGTGTGTGTCCAGCCAGAGTTACAGAATAACACAAAGCATGCAG
ATAACTCATCCGACACAGAGATAGAAGACATGATGGCTGAAGAGACATTGGAAGAAATGGATAGCGAGTT
ACTCAAGTGTGAATTCTGTGGAAAAATGGGATATCCTAATGAATTTTTACGGTCCAAACGATTCTGTACT
ATGTCATGTGCCAAAAGGTACAACGTTAGCTGTTCTAAAAAATTTGCACTTAGTCGTTGGAATCGTAAGC
CTGATAATCAGAGTCTTGGGCATCGGGGCCGTCGTCCAAGTGGCCCTGAAGGGGCAGCAAGAGAACATAT
CCTTAGGCAGCTTCCAATTACTTATCCATCTGCAGAAGAAGACGTGGCCTCTCATGAAGATCCTGTGCCT
TCTGCTATGACGACCCGTCTGCGAAGGCAGAGCGAGCGGGAAAGAGAGCGAGAGCTTCGGGATGTGAGGA
TTAGGAAGATGCCTGAGAATAGTGACTTGCTCCCAGTCGCACAGACTGAGCCCTCCATATGGACAGTCGA
CGACGTCTGGGCCTTCATCCATTCTTTGCCCGGCTGCCAGGACGTTGCAGATGAGTTCAGGGCACAAGAG
ATTGATGGGCAGGCCCTGCTCTTGCTAAAAGAAGACCATCTCATGAGTGCAATGAACATGAAGCTGGGCC
CAGCCCTGAAGATTTGTGCACGCATCAACTCTCTGAAGGACTCTTAA

Translation (948 aa):
MDSEPSSGTSVSTTASSTTTTTITTSSSRMQQPQISVYSGSDRHAVQVIQQALHRPPSSAAQYLQQMYAA
QQQHLMLHTAALQQQHLSSSQLQSLAAVQASLSSGRPSTSPTGSVTQQSSMSQTSILSASPAPAQLMNRS
QTSSSTSGSITQQTMLLGSTSPTLTASQAQMYLRAQMVQNLTLRSQKLGVLSSSQNGSPKSAGQTQSLTI
CHNKTTVTSSKISQRDPSPESKKGGSPGLESRSTAVTRTSSIHQLIAPASYSPIQPHSLIKHQQIPLHSP
PPKVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNHGLSPAPSNAQPQHCSPVQSHPPPLTVSP
NQAQSAQQSVVVSPPPPHSPSQSPTIIIHPQALIQPHPLVSSALQTGPNLQQAAADQVQSTAQLNLPSHL
PLPASPVVHIGPVQQSALVSPGQQMVSPTSHQQYSALQSSPIPIATPPQMSASPPAQLPPLPLQSMQSLQ
VQPEILSQGQVLVQNALVSEEELPAAEALVQLPFQTLPPPQTVAVNLQVQPPAPVDPPVVYQVEDVCEEE
MPEESDECARMDRTPPPPTLSPAAVTVGRGEDLTSEHPLLEQVELPAVASVSASVIKSPSDPTHASAPAP
PLLIPAASTRSSSTSLASSTPSLENKPPQAIVKPQILTHVIEGFVIQEGLEPFPVSRSSLLIEQPVKKRP
LLDNQVVNSVCVQPELQNNTKHADNSSDTEIEDMMAEETLEEMDSELLKCEFCGKMGYPNEFLRSKRFCT
MSCAKRYNVSCSKKFALSRWNRKPDNQSLGHRGRRPSGPEGAAREHILRQLPITYPSAEEDVASHEDPVP
SAMTTRLRRQSERERERELRDVRIRKMPENSDLLPVAQTEPSIWTVDDVWAFIHSLPGCQDVADEFRAQE
IDGQALLLLKEDHLMSAMNMKLGPALKICARINSLKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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