CCDS Report for Consensus CDS

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Report for CCDS50885.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
50885.1	Public	Mus musculus	3	Phc3	23	108	98

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50885.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000064718.11	ENSMUSP00000065617.5	Accepted	alive
		NCBI	NM_001165956.1	NP_001159428.1	Accepted	alive

Chromosomal Locations for CCDS 50885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)

Genome Browser links:

Chromosome	Start	Stop
3	30907336	30907490
3	30914095	30914326
3	30914418	30914550
3	30916603	30916717
3	30922197	30922356
3	30929813	30930063
3	30931739	30931892
3	30936285	30936599
3	30936726	30937156
3	30942409	30942652
3	30948702	30948800
3	30950876	30951031
3	30958009	30958086
3	30961728	30961883
3	30965773	30965935
3	30969374	30969387

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2856 nt):
ATGGCGGAAGCGGAGTTTAAGGACCACAGCACAGCTATGGATAGTGAGCCGAGCTCTGGAACATCCGTGT CAACAACAGCCAGCAGTACCACCACCACCACCATCACCACATCCTCCTCCCGAATGCAGCAGCCACAGAT CTCTGTCTACAGCGGGTCAGACCGACATGCTGTTCAGGTAATTCAGCAGGCCTTGCATCGGCCCCCCAGC TCGGCAGCTCAGTACCTGCAGCAGATGTACGCGGCTCAGCAGCAGCACCTGATGCTGCACACGGCTGCTC TGCAGCAGCAGCACCTAAGCAGCTCGCAGCTCCAGAGCCTTGCGGCTGTCCAGGCAAGTTTGTCCAGTGG AAGACCATCTACATCCCCCACAGGCAGTGTTACACAACAGTCAAGTATGTCCCAGACATCTATCCTGTCC GCTTCTCCTGCACCTGCTCAGCTGATGAACCGCTCCCAGACGTCCAGTTCTACCAGCGGCAGTATTACCC AGCAGACTATGCTACTCGGGAGTACCTCTCCCACCCTAACTGCCAGCCAAGCCCAGATGTATCTCCGAGC TCAGATGCTGATTTTCACACCTGCTACCACTGTGGCTGCTGTACAGTCTGACATCCCTGTTGTCTCGTCG TCACCGTCACCTTCCTGTCAGTCTGCAGCTGCTCAGGTTCAGAATTTAACCTTACGCAGCCAGAAGCTGG GTGTCTTATCTAGCTCACAGAATGGCTCACCAAAAAGCGCTGGTCAAACCCAGTCCTTGACAATTTGCCA TAATAAAACAACAGTGACCAGTTCTAAAATCAGCCAACGAGACCCTTCTCCAGAGAGCAAGAAGGGAGGA AGCCCAGGTCTGGAATCTCGGAGCACGGCCGTCACTCGGACATCAAGCATCCACCAGTTAATAGCACCAG CTTCATATTCTCCAATTCAGCCTCATTCTCTAATCAAACATCAGCAGATTCCTCTTCATTCACCACCTCC TAAAGTTTCCCATCATCAGCTGCTATTACAACAGCAACAACAGCAAATTCAGCCAATCACCCTTCAGAGT CCAAGTCAAGATCCACCCCCATCCCAGCACTGTATCCCACTCCCAAACCATGGCCTTTCTCCGGCTCCCA GTAATGCCCAGCCGCAGCATTGCTCCCCAGTTCAGAGCCATCCTCCGCCTTTAACTGTGTCTCCCAACCA GGCACAGTCCGCACAGCAGTCTGTAGTGGTGTCTCCTCCCCCCCCTCATTCCCCAAGTCAGTCTCCTACT ATAATTATCCATCCACAAGCACTTATCCAGCCACACCCTCTTGTGTCTTCAGCTCTTCAAACAGGGCCAA ATTTGCAGCAGATGGTGTCCCCAACATCACACCAGCAGTATTCAGCCCTACAGTCCTCTCCAATTCCCAT CGCGACCCCTCCACAGATGTCGGCATCTCCTCCAGCTCAGCTCCCACCACTGCCCTTGCAGTCTATGCAG TCTTTACAAGTGCAGCCTGAAATTCTATCCCAGGGCCAGGTTTTGGTGCAGAATGCTTTGGTGTCAGAAG AGGAGCTACCTGCTGCAGAAGCTTTGGTCCAGTTGCCATTTCAGACTCTTCCTCCTCCACAGACTGTTGC GGTAAATCTACAAGTACAGCCGCCAGCACCTGTTGATCCACCAGTGGTTTATCAAGTAGAAGATGTGTGT GAGGAAGAAATGCCAGAGGAGTCCGATGAGTGTGCAAGGATGGACAGAACCCCCCCACCCCCCACCTTGT CTCCAGCAGCTGTCACTGTGGGGAGGGGAGAGGACTTGACATCCGAACATCCTTTGTTAGAGCAAGTGGA GTTGCCTGCTGTGGCCTCAGTCAGTGCTTCCGTGATCAAGTCTCCATCAGACCCCACCCATGCCTCTGCT CCTGCACCTCCCCTCTTAATCCCTGCTGCCTCCACCAGGAGCAGCAGCACTTCTCTGGCCAGCAGCACTC CCAGCCTGGAAAACAAGCCTCCACAGGCTATTGTGAAACCACAGATTTTGACCCACGTTATAGAAGGCTT TGTGATTCAGGAGGGGCTGGAGCCGTTTCCTGTGAGTCGATCATCACTGCTGATAGAACAACCTGTGAAG AAGAGGCCTCTCTTGGATAATCAGGTGGTAAACTCTGTGTGTGTCCAGCCAGAGTTACAGAATAACACAA AGCATGCAGATAACTCATCCGACACAGAGATAGAAGACATGATGGCTGAAGAGACATTGGAAGAAATGGA TAGCGAGTTACTCAAGTGTGAATTCTGTGGAAAAATGGGATATCCTAATGAATTTTTACGGTCCAAACGA TTCTGTACTATGTCATGTGCCAAAAGGTACAACGTTAGCTGTTCTAAAAAATTTGCACTTAGTCGTTGGA ATCGTAAGCCTGATAATCAGAGTCTTGGGCATCGGGGCCGTCGTCCAAGTGGCCCTGAAGGGGCAGCAAG AGAACATATCCTTAGGCAGCTTCCAATTACTTATCCATCTGCAGAAGAAGACGTGGCCTCTCATGAAGAT CCTGTGCCTTCTGCTATGACGACCCGTCTGCGAAGGCAGAGCGAGCGGGAAAGAGAGCGAGAGCTTCGGG ATGTGAGGATTAGGAAGATGCCTGAGAATAGTGACTTGCTCCCAGTCGCACAGACTGAGCCCTCCATATG GACAGTCGACGACGTCTGGGCCTTCATCCATTCTTTGCCCGGCTGCCAGGACGTTGCAGATGAGTTCAGG GCACAAGAGATTGATGGGCAGGCCCTGCTCTTGCTAAAAGAAGACCATCTCATGAGTGCAATGAACATGA AGCTGGGCCCAGCCCTGAAGATTTGTGCACGCATCAACTCTCTGAAGGACTCTTAA
Translation (951 aa):
MAEAEFKDHSTAMDSEPSSGTSVSTTASSTTTTTITTSSSRMQQPQISVYSGSDRHAVQVIQQALHRPPS SAAQYLQQMYAAQQQHLMLHTAALQQQHLSSSQLQSLAAVQASLSSGRPSTSPTGSVTQQSSMSQTSILS ASPAPAQLMNRSQTSSSTSGSITQQTMLLGSTSPTLTASQAQMYLRAQMLIFTPATTVAAVQSDIPVVSS SPSPSCQSAAAQVQNLTLRSQKLGVLSSSQNGSPKSAGQTQSLTICHNKTTVTSSKISQRDPSPESKKGG SPGLESRSTAVTRTSSIHQLIAPASYSPIQPHSLIKHQQIPLHSPPPKVSHHQLLLQQQQQQIQPITLQS PSQDPPPSQHCIPLPNHGLSPAPSNAQPQHCSPVQSHPPPLTVSPNQAQSAQQSVVVSPPPPHSPSQSPT IIIHPQALIQPHPLVSSALQTGPNLQQMVSPTSHQQYSALQSSPIPIATPPQMSASPPAQLPPLPLQSMQ SLQVQPEILSQGQVLVQNALVSEEELPAAEALVQLPFQTLPPPQTVAVNLQVQPPAPVDPPVVYQVEDVC EEEMPEESDECARMDRTPPPPTLSPAAVTVGRGEDLTSEHPLLEQVELPAVASVSASVIKSPSDPTHASA PAPPLLIPAASTRSSSTSLASSTPSLENKPPQAIVKPQILTHVIEGFVIQEGLEPFPVSRSSLLIEQPVK KRPLLDNQVVNSVCVQPELQNNTKHADNSSDTEIEDMMAEETLEEMDSELLKCEFCGKMGYPNEFLRSKR FCTMSCAKRYNVSCSKKFALSRWNRKPDNQSLGHRGRRPSGPEGAAREHILRQLPITYPSAEEDVASHED PVPSAMTTRLRRQSERERERELRDVRIRKMPENSDLLPVAQTEPSIWTVDDVWAFIHSLPGCQDVADEFR AQEIDGQALLLLKEDHLMSAMNMKLGPALKICARINSLKDS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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