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Report for CCDS50960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50960.1 Public Mus musculus 3 Krtcap2 23 108 98 CCDS HistoryNCBI Gene:66059Re-query CCDS DB by CCDS ID:50960.1Re-query CCDS DB by GeneID:66059See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040888.11 ENSMUSP00000043540.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040888.11Link to Ensembl Protein Viewer:ENSMUSP00000043540.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040888Re-query CCDS DB by Protein ID:ENSMUSP00000043540
Original member Current member NCBI NM_025327.3 NP_079603.1 Accepted alive Link to Nucleotide Sequence:NM_025327.3Link to Protein Sequence:NP_079603.1Re-query CCDS DB by Nucleotide ID:NM_025327Re-query CCDS DB by Protein ID:NP_079603Link to BLAST:NP_079603.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079603.1 136 Q5RL79 136 100% 0 0

Chromosomal Locations for CCDS 50960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89246512 89246515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89246778 89246932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89247065 89247128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89249074 89249140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89249571 89249691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGTAGTCGGTACCGGGACCTCCTTGGCGCTGTCCTCCCTCCTGTCCCTGCTGCTCTTCGCTGGCATGC
AGATCTACAGCCGCCAGCTGGCCTCCACCGAGTGGCTCACCATTCAGGGGGGCCTGCTGGGCTCCGGCCT
TTTCGTCTTCTCCCTGACTGCCTTCAATAATCTGGAGAATCTGGTCTTTGGTAAAGGCTTCCAAGCAAAA
ATCTTCCCTGAGATTCTCCTCTGCTTGCTGTTGGCGCTCTTTGCCTCCGGCCTCATCCACCGAGTTTGTG
TCACCACTTGCTTCATCTTCTCCATGGTTGGTCTGTACTACATCAACAAGATATCGTCCACTCTGTACCA
GGCAACAGCTCCAGTTCTCACACCGGCCAAAATCACTGGCAAGGGCAAGAAGAGAAACTAA

Translation (136 aa):
MVVGTGTSLALSSLLSLLLFAGMQIYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAK
IFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTLYQATAPVLTPAKITGKGKKRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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