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Report for CCDS51018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51018.1 Public Mus musculus 3 Trim45 23 108 98 CCDS HistoryNCBI Gene:229644Re-query CCDS DB by CCDS ID:51018.1Re-query CCDS DB by GeneID:229644See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000134993.2 ENSMUSP00000115669.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134993.2Link to Ensembl Protein Viewer:ENSMUSP00000115669.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000134993Re-query CCDS DB by Protein ID:ENSMUSP00000115669
Original member Current member NCBI NM_001165953.1 NP_001159425.1 Accepted alive Link to Nucleotide Sequence:NM_001165953.1Link to Protein Sequence:NP_001159425.1Re-query CCDS DB by Nucleotide ID:NM_001165953Re-query CCDS DB by Protein ID:NP_001159425Link to BLAST:NP_001159425.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159425.1 757 Q6PFY8-2 757 100% 0 0

Chromosomal Locations for CCDS 51018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 100922912 100923399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100924941 100925674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100927225 100927354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100928055 100928169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100929817 100929943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100930026 100930078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100931431 100932057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGTCAGAAATCAGGAAGCCGCTTCTGGGTTTCGTGCACAAACTCCAAGATGCGAACGCGTCTGGAAGCT
CAGGCAAGACTCATTGTCCTACATGTCTGAGGCTTTTCAAAGTCCCCAGGCTCTTGCCTTGCTTGCACAC
AGTGTGCACCACGTGTCTGGAAAAGCTGGATCCATTCTCAGTAGTGGACATCCGTGGGGGTGACTCAGAT
ACAAGCTCTGAGGGGTCAGTATTCCAGGACCCCGAGTTATGTAGCCTGCAGCCACAGATCGGCATCCTCT
GTCCGGTATGTGATGCTCAAGTGGACCTGCCCTTGGGTGGAGTGAAGGCTTTAACGGTAGACCACCTGGC
CATGAATGATGTGCTGCTGGAGAACCTGCGTGGGGAAGGCCAGGGCCTGGTGTGTGACCTGTGCAGCGAC
AGAGAAGTAGAGAAGAGGTGTCAGACCTGCAAAGCCAATCTCTGCCACTTCTGCTGCCAGGCTCATAGGC
GACAGAAGAAGACGACATATCACACCATGGTGGACCTAAAAGACCTGAAAGGCTACAGCCAGGTTGGAAA
GCCCATCCTATGTCCTTCTCACCCTGCAGAGGAGCTGAGGCTGTTCTGTGAACTCTGTGACCGGCCGGTG
TGTCGGGACTGTGTAGTTGGGGAGCACCGAGAGCACCCCTATGACTTCACCAGCAATGTCATCCACAAGC
ATGGAGATTCTGTGCGGGAGCTGCTTCGAGACACCCAGCCCCATGTGGAAGCCCTGGAAGATGCCCTGGC
ACAGATTAAAAGTGTGAACAACGCCCTCCAAGAGCGAGTGGAGGCAGTGGCAGCTGACGTCCGGACATTC
TCTGAGGGCTACATCAAAGCCATCGAGGAACACCGGGACAAGCTGCTGCAGCAGCTGGATGACATACGGA
TCCAGAGGGAAACCGCTTTACAGCTGCAGAAAGCGCAGCTGGAACAGCTGCTGGCAGATATGCGGACTGG
AGTGGAGTTCACCGAGCATCTGCTGACCAGCGGCTCGGACTTAGAGATTCTCATCACCAAGGGAGTGGTT
GTAGAGCGGCTCAGGAAGCTGAATAAAGTTGAATACAGTGCCCGCCCAGGAGTGAACCATAAGATCTGCT
TCTCCCCCCAGGAGAAGGCAGGCCAGTGCCAAGGCTATGAAGTGTATGGGGCCATTAACACGCAGGAAGT
TGATCCAGCTCAGTGTGTCCTTCAGGGAGAAGATCTCCACAGAGCTCGAGAGAAACAGACAGCCTCTTTT
ACCTTGTTCTGTAAGGATGCCTCGGGACAGAGCATGGGCAGGGGAGGAGATAATGTCCATGTGGAAGTTG
TCCCCAAAGATAAGAAGGACAGTCCGATCAGAACAGTGGTCCAGGACAACAAGGATGGGTCGTACCGCGT
TTCCTACACCCCCAAGGAGCCTGGCATCTACACCGTGTGGGTCTGCATCAGAGAGCAGCACGTGCAGGGC
TCACCATTCAACGTGACCGTGAGGAGGAAGCATCGGCCACATCCGGGTGTGTTTCACTGCTGCACCTTCT
GCTCCAGTGGAGGACAGAAAGCTGCCCGCTGTGCCTGCGGAGGCACCATGCCGGCCCGCAGGCCCAAGCA
GCAGCAAGCAAGGGTCCGTCCCTTTGCTGCCTCACAGGTGGATACCTTGGCTGTGGCCACGGACACAAAG
GCCACCCGGGCCGTCCACACTGGTCTTGCTGTGGGAAGTTCATTGAGAAGTCCGAGTGCTCGTTCACGAG
TGGGCAGGGCGCCCCGAGGAGTCTGCTTAGGACCGTGGCGCTCTGATGCTTCCTGGGGACAAGTCGGGCC
AGGTAACCCTGAAGCTAGCATAACTTCAGCTATGCAGAGAACCCAGAGCTTGAGTAGTTCCAAAGAGACT
GACAGAATTAAAGACGAAGTGCTTTCTCTAACATCAGACTTCAAGTGCTTTCTGTGTGGGCATCTCTCGT
GTACCATGGCGGAGTGCAGGCCTCCCCTACACCGCTCCTCAAGGCAGGCTGCTGATCTACTCCACGGAAA
GCTCTCCTGTTTTATACGGGCATTGAGGTGTCTGTGCCATGGGACCATGAGCTCCTGGAGCAGGGAGGAC
TTTATGCCTTCCTTTCCACTGTGTTGCAGCCTCTCCGGTTTACCCCGAGCTAGAGTTTCAGGGCTTCTCC
TGGAGGATGAAACCCCTCTGGCCCATCATTTGTTTGTTGTATACTTTCAGTGGTTTCCTAGTACACAGTT
TATGATGATTATCACGGTTTTGCCGTCTAGATGA

Translation (757 aa):
MSEIRKPLLGFVHKLQDANASGSSGKTHCPTCLRLFKVPRLLPCLHTVCTTCLEKLDPFSVVDIRGGDSD
TSSEGSVFQDPELCSLQPQIGILCPVCDAQVDLPLGGVKALTVDHLAMNDVLLENLRGEGQGLVCDLCSD
REVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLKGYSQVGKPILCPSHPAEELRLFCELCDRPV
CRDCVVGEHREHPYDFTSNVIHKHGDSVRELLRDTQPHVEALEDALAQIKSVNNALQERVEAVAADVRTF
SEGYIKAIEEHRDKLLQQLDDIRIQRETALQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKGVV
VERLRKLNKVEYSARPGVNHKICFSPQEKAGQCQGYEVYGAINTQEVDPAQCVLQGEDLHRAREKQTASF
TLFCKDASGQSMGRGGDNVHVEVVPKDKKDSPIRTVVQDNKDGSYRVSYTPKEPGIYTVWVCIREQHVQG
SPFNVTVRRKHRPHPGVFHCCTFCSSGGQKAARCACGGTMPARRPKQQQARVRPFAASQVDTLAVATDTK
ATRAVHTGLAVGSSLRSPSARSRVGRAPRGVCLGPWRSDASWGQVGPGNPEASITSAMQRTQSLSSSKET
DRIKDEVLSLTSDFKCFLCGHLSCTMAECRPPLHRSSRQAADLLHGKLSCFIRALRCLCHGTMSSWSRED
FMPSFPLCCSLSGLPRARVSGLLLEDETPLAHHLFVVYFQWFPSTQFMMIITVLPSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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