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Report for CCDS51040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51040.1 Public Mus musculus 3 Dennd2d 23 108 98 CCDS HistoryNCBI Gene:72121Re-query CCDS DB by CCDS ID:51040.1Re-query CCDS DB by GeneID:72121See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029508.10 ENSMUSP00000029508.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029508.10Link to Ensembl Protein Viewer:ENSMUSP00000029508.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029508Re-query CCDS DB by Protein ID:ENSMUSP00000029508
Original member Current member NCBI NM_001093754.2 NP_001087223.1 Accepted alive Link to Nucleotide Sequence:NM_001093754.2Link to Protein Sequence:NP_001087223.1Re-query CCDS DB by Nucleotide ID:NM_001093754Re-query CCDS DB by Protein ID:NP_001087223Link to BLAST:NP_001087223.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001087223.1 466 Q91VV4-2 466 100% 0 0

Chromosomal Locations for CCDS 51040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 106482656 106482713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106486873 106487048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106487851 106487963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106488572 106488641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106490335 106490412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106491226 106491366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106492429 106492577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106494831 106495008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106498818 106498859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106499221 106499305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106499755 106499994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106500536 106500606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGATGGGCTCGGCCGCCGCCTCCGAGCCAGCCTGAGACTGAAACGCGGCCAGCGGGGACAATCCCAGA
ACAATCCTGGGGAAGCTGTCACAGAGCCAGAAAGGATCCAGGAGCATTCTCCATCTAGCTTTGCTGGAGG
CCAGCACTTCTTTGAATACCTTCTTGTTGTTTCTTTAAAGAAAAAGCGTTTAGGGGATGACTATGAGCCC
ACGATCACTTACCAGTTTCCCAAGAGGGAGAACCTGCTCCGAGGTCAGCAGGAGGAGGAGGACCGGTTGC
TCAGTGCCATCCCTTTGTTCTGCTTCCCTGATGGAAATGAGTGGGCACCACTCACAGAGTATCCCAGGGA
GACCTTCTCATTTGTCCTGACCAATGTGGATGGGAGCAGGAAGATCGGATACTGCAGGCGCCTCCTGCCT
GCCGGTCCTGGTCCTCAACTTCCCAAAGTGTACTGCATCATCAGCTGCATCGGCTGCTTCGGCTTGTTCT
CCAAGATACTAGATGAAGTAGAGAAGAGGCATCAGATCTCCATGGCTGTCATCTACCCATTCATGCAAGG
TCTCCGAGAGGCAGCCTTTCCTGCACCTGGAAAGACAGTCACCCTTAAGAGCTTCATTCCTGACTCAGGC
ACAGAGTTCATCTCACTGACACGGCCCCTAGACTCCCACCTTGAACACGTGGACTTCAGTGTTCTGCTAC
ACTGTCTCCATTTGGAGCAGATTATTCAGATCTTTGCCTCTGCAGTGCTGGAAAGAAAAATCATCTTTTT
GGCAGAGGGTCTCAGTACCCTGTCTCAGTGTATCCATGCTGCTGCAGCTCTGCTTTACCCATTTAGTTGG
GCACACACATACATCCCTGTGGTCCCTGAGAGCCTTCTGGCCACTGTCTGCTGCCCTACCCCCTTCATGG
TTGGGGTACAGATGCGCTTCCTGCAGGAGGTTATGGACAGTCCCATGGAAGAGGTCCTGTTAGTGAATCT
TTGTGAAGGAACCTTCTTATTGTCGGTTGGTGATGAGAAAGATATTCTACCACCAAAACTTCAGGATGAC
ATCTTGGACTCTCTTGGTCAAGGGATAAATGAGTTAAAGACTTCAGAACAAATCAATGAGCATGTTTCAG
GCCCTTTTGTACAGTTCTTTGTCAAGACTGTGGGCCACTATGCCTCCTATATAAAACGGGAGGCCAGTGG
ACAAGGTCATTTCCAAGAACGATCCTTCTGTAAGGCTGTTACCTCCAAGACCAAGCGCCGATTTGTGAAG
AAGTTTGTGAAGACACAACTTTTCTCCCTATTCATCCAGGAAGCAGAGAAGAGCAGGAACCCTCCTGCAG
GCTACTTCCAAAAGAAAATACTTGAGTACGAGGAACAGAAGAAACAGAAGAAATCAAGAGAAAGACTGTG
A

Translation (466 aa):
MDGLGRRLRASLRLKRGQRGQSQNNPGEAVTEPERIQEHSPSSFAGGQHFFEYLLVVSLKKKRLGDDYEP
TITYQFPKRENLLRGQQEEEDRLLSAIPLFCFPDGNEWAPLTEYPRETFSFVLTNVDGSRKIGYCRRLLP
AGPGPQLPKVYCIISCIGCFGLFSKILDEVEKRHQISMAVIYPFMQGLREAAFPAPGKTVTLKSFIPDSG
TEFISLTRPLDSHLEHVDFSVLLHCLHLEQIIQIFASAVLERKIIFLAEGLSTLSQCIHAAAALLYPFSW
AHTYIPVVPESLLATVCCPTPFMVGVQMRFLQEVMDSPMEEVLLVNLCEGTFLLSVGDEKDILPPKLQDD
ILDSLGQGINELKTSEQINEHVSGPFVQFFVKTVGHYASYIKREASGQGHFQERSFCKAVTSKTKRRFVK
KFVKTQLFSLFIQEAEKSRNPPAGYFQKKILEYEEQKKQKKSRERL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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