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Report for CCDS51042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51042.1 Public Mus musculus 3 Lamtor5 23 108 98 CCDS HistoryNCBI Gene:68576Re-query CCDS DB by CCDS ID:51042.1Re-query CCDS DB by GeneID:68576See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145735.5 ENSMUSP00000129012.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145735.5Link to Ensembl Protein Viewer:ENSMUSP00000129012.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145735Re-query CCDS DB by Protein ID:ENSMUSP00000129012
Original member Current member NCBI NM_026774.2 NP_081050.2 Accepted alive Link to Nucleotide Sequence:NM_026774.2Link to Protein Sequence:NP_081050.2Re-query CCDS DB by Nucleotide ID:NM_026774Re-query CCDS DB by Protein ID:NP_081050Link to BLAST:NP_081050.2

Chromosomal Locations for CCDS 51042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107278917 107279113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107279870 107279931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107281909 107282026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107283635 107283695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGCCTTTTCGTAAAGAGCGCGGACGCGGCGCCGCGCTGAATTTCGTCCCTCTGGAGACGCCGTCCAGGC
GCCCGCCTCGGTCAAGTCACGTGATCGAGGTTTGCGGTGAAGGAGGAAGTGTTTTGCTGCGGGGTCCTGG
CCTGGGGCGGACAGCCTGCGGGATGGAGGCGACTTTGGAGCAGCATTTGGAGGACACAATGAAGAATCCA
TCCATTGTTGGAGTCCTATGCACAGATTCACAAGGACTTAATCTGGGCTGCCGTGGTACCCTGTCGGATG
AGCACGCTGGAGTCATATCTGTTCTAGCCCAGCAGGCAGCTAGGCTAACCTCTGACCCCACCGACATCCC
TGTGGTATGTTTAGAATCAGATAATGGGAACATTATGATCCAGAAACACGATGGCATCACAGTGGCTGTG
CACAAAATGGCCTCTTGA

Translation (145 aa):
MPFRKERGRGAALNFVPLETPSRRPPRSSHVIEVCGEGGSVLLRGPGLGRTACGMEATLEQHLEDTMKNP
SIVGVLCTDSQGLNLGCRGTLSDEHAGVISVLAQQAARLTSDPTDIPVVCLESDNGNIMIQKHDGITVAV
HKMAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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