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Report for CCDS51082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51082.1 Public Mus musculus 3 Rap1gds1 23 108 98 CCDS HistoryNCBI Gene:229877Re-query CCDS DB by CCDS ID:51082.1Re-query CCDS DB by GeneID:229877See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51082.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029796.10 ENSMUSP00000029796.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029796.10Link to Ensembl Protein Viewer:ENSMUSP00000029796.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029796Re-query CCDS DB by Protein ID:ENSMUSP00000029796
Original member NCBI NM_145544.3 NP_663519.2 Updated not alive Link to Nucleotide Sequence:NM_145544.3Link to Protein Sequence:NP_663519.2Re-query CCDS DB by Nucleotide ID:NM_145544Re-query CCDS DB by Protein ID:NP_663519
Current member NCBI NM_145544.4 NP_663519.2 Accepted alive Link to Nucleotide Sequence:NM_145544.4Link to Protein Sequence:NP_663519.2Re-query CCDS DB by Nucleotide ID:NM_145544Re-query CCDS DB by Protein ID:NP_663519Link to BLAST:NP_663519.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663519.2 558 E9Q912-3 558 100% 0 0

Chromosomal Locations for CCDS 51082.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138927585 138927712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138941730 138941858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138945663 138945789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138955322 138955461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138956194 138956319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138957410 138957544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138958554 138958685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138959036 138959179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138963825 138963950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138965868 138965996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139015546 139015671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139021813 139021935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139050481 139050588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139075036 139075039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGATAACCTCAGTGACACTTTAAAGAAGCTGAAGATAACAGCTGCTGACAGGACAGAGGGCAGTCTGG
AAGGATGCTTGGATTGTCTGCTTCAAGCCTTGGCTCAGAATAATGCAGAAACAAGTGAAAAAATACAAGG
AAGTGGAATTCTTCAGTTGTTTGCAAATCTGTTGACGCCACAGGCCTCCTGCACAGCCAAAGTAGCCGAC
ATCATAGCAGAAGTAGCCAAAAATGAATTTATGCGAATCCCATGTGTAGATGCTGGATTGATTTCACCAC
TGGTACAGCTGTTAAATAGCAAAGACCAGGAAGTGCTGCTTCAAACGGGCAGGGCATTAGGAAACATATG
CTACGATAGCCATTCCCTTCAGGCCCAGCTTATTAGCATGGGTGTTATCCCGACCTTAGTGAAGCTACTG
GGCATTCACTGCCACAATGCAGCACTCACCGAGATGTGTCTCGTTGCGTTCGGGAATTTAGCAGAACTTG
AGTCAAGTAAAGAACAGTTTGCTAGCACAAACATTGCTGAAGAGCTGGTAAAACTATTCAAGAAACAAAT
AGAACACGATAAAAGAGAGATGATTTTTGAAGTTCTAGCGCCATTGGCAGAGAATGATGCTATTAAGCTG
CAGCTGGTTGAAGCAGGTTTGGTAGAGTGTCTCCTAGAGATCGTCCAACAGAAGGTGGATAGCAACAAAG
AGGACGACGTTGCCGAGCTTAAAACTGCTTCTGACCTCATGGTTTTATTACTGCTTGGAGATGAGTCCAT
GCAGAAACTTTTTGAAGGAGGAAAAGGCAGTGTGTTCCAAAGGGTGCTCTCCTGGATCCCATCGAATAAC
CACCAGCTGCAGCTGGCTGGGGCATTAGCCATTGCAAATTTTGCCAGGAACGATGGAAATTGTATTCATA
TGGTAGACAATGGGATTGTAGAAAAACTCATGGATTTGCTGGACAGACACGTAGAAGACGGGAACGTGAC
GGTGCAGCACGCCGCACTAAGTGCCCTCAGGAATCTAGCCATCCCAGTTGTAAATAAAGCAAAGATGTTA
TCAGCTGGTGTCACGGAGACGGTTTTGAAATTCCTTAAATCTGAAATGCCCCCAGTTCAGTTCAAACTCC
TGGGAACGCTAAGAATGTTAATAGATGCACAAGCAGAAGCTGCTGAGCAACTGGGAAAGAATGCTAAACT
GGTAGAGCGTTTGGTTGAATGGTGTGAAGCCAAAGATCATGCCGGCGTGATGGGCGAATCAAACAGACTG
CTCTCTGCCCTCATCCGACACAGTAAATCAAAAGATGTAATTAAAACCATTGTACAGAGTGGTGGCATCA
AGCACCTGGTTACCATGGCAACTAGTGAACATGTAATCATGCAGAATGAAGCTCTTGTCGCCCTGGCACT
GATAGCAGCCTTGGAACTGGGTCCCGCTGAGAAGGATCTCGCAAGTGCTCAGCTTGTTCAGATCTTACAC
CGACTGCTAGCAGATGAGAGAAGTGCCCCGGAGATCAAGTACAATTCCATGGTCCTGATCTGCGCTCTCA
TGGGATCCGAATCTCTATACAAGGAAGTACAGGATTTGGCCTTTCTAGATGTTGTCTCCAAACTTCGAAG
TCATGAGAACAAAAGTGTTGCCCAACAGGCCTCGCTTACAGAGCAGAGACTTACAGTGGAAAGCTGA

Translation (558 aa):
MDNLSDTLKKLKITAADRTEGSLEGCLDCLLQALAQNNAETSEKIQGSGILQLFANLLTPQASCTAKVAD
IIAEVAKNEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHSLQAQLISMGVIPTLVKLL
GIHCHNAALTEMCLVAFGNLAELESSKEQFASTNIAEELVKLFKKQIEHDKREMIFEVLAPLAENDAIKL
QLVEAGLVECLLEIVQQKVDSNKEDDVAELKTASDLMVLLLLGDESMQKLFEGGKGSVFQRVLSWIPSNN
HQLQLAGALAIANFARNDGNCIHMVDNGIVEKLMDLLDRHVEDGNVTVQHAALSALRNLAIPVVNKAKML
SAGVTETVLKFLKSEMPPVQFKLLGTLRMLIDAQAEAAEQLGKNAKLVERLVEWCEAKDHAGVMGESNRL
LSALIRHSKSKDVIKTIVQSGGIKHLVTMATSEHVIMQNEALVALALIAALELGPAEKDLASAQLVQILH
RLLADERSAPEIKYNSMVLICALMGSESLYKEVQDLAFLDVVSKLRSHENKSVAQQASLTEQRLTVES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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