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Report for CCDS51103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51103.1 Under review, update Mus musculus 3 Srsf11 23 108 98 CCDS HistoryNCBI Gene:69207Re-query CCDS DB by CCDS ID:51103.1Re-query CCDS DB by GeneID:69207See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 51103.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121326.7 ENSMUSP00000113685.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121326.7Link to Ensembl Protein Viewer:ENSMUSP00000113685.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121326Re-query CCDS DB by Protein ID:ENSMUSP00000113685
Original member NCBI NM_001093752.2 NP_001087221.1 Updated not alive Link to Nucleotide Sequence:NM_001093752.2Link to Protein Sequence:NP_001087221.1Re-query CCDS DB by Nucleotide ID:NM_001093752Re-query CCDS DB by Protein ID:NP_001087221
NCBI NM_001093752.3 NP_001087221.1 Updated not alive Link to Nucleotide Sequence:NM_001093752.3Link to Protein Sequence:NP_001087221.1Re-query CCDS DB by Nucleotide ID:NM_001093752Re-query CCDS DB by Protein ID:NP_001087221
NCBI NM_001093752.4 NP_001087221.2 Updated not alive Link to Nucleotide Sequence:NM_001093752.4Link to Protein Sequence:NP_001087221.2Re-query CCDS DB by Nucleotide ID:NM_001093752Re-query CCDS DB by Protein ID:NP_001087221
Current member NCBI NM_001093752.5 NP_001087221.2 Pending alive Link to Nucleotide Sequence:NM_001093752.5Link to Protein Sequence:NP_001087221.2Re-query CCDS DB by Nucleotide ID:NM_001093752Re-query CCDS DB by Protein ID:NP_001087221Link to BLAST:NP_001087221.2

Chromosomal Locations for CCDS 51103.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 158012009 158012203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158012310 158012448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158012780 158012875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158013952 158014041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158016322 158016453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158017810 158017891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158019312 158019439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158021376 158021425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158021960 158022052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158022841 158022950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158026725 158026858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158031452 158031648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158036516 158036605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGTCGTCACCGCCAGCTCCCGGGACCGCAGGACCGACGAGCCCTTCCGTTGCCCTCACCAACCTCGCCC
TCAGGAGAAACTTCTTTCGGGAGGCAGCCCGCGCCATGAGCAGCACGGCAGTGGTCCCCAGCGCGCCAGG
CCCGGGCCCAGGCCCCAGTGGCGGGCCAGGCGGCGGCACCGAGGTGATCCAGGTGACCAACGTGTCTCCG
AGCGCCAGCTCAGAGCAGATGCGTACGCTCTTCGGCTTCCTGGGCAAGATCGACGAGCTGCGCCTCTTCC
CGCCGGATGACTCACCTTTGCCAGTCTCCTCTCGTGTCTGCTTTGTTAAGTTCCATGATCCAGACTCAGC
AGTTGTGGCACAGCATCTGACAAACACTGTGTTCGTTGACAGAGCTTTGATAGTCGTACCATATGCTGAA
GGAGTTATTCCTGATGAGACTAAGGCTTTGTCTCTATTGGCACCAGCTAATGCAGTGGCAGGTCTTCTGC
CTGGTGGTGGACTCCTGCCTACCCCCAACCCACTTACCCAGATTGGCGCTGTTCCCCTGGCTGCGTTGGG
AGCTCCAGCTCTTGATCCTGCCCTTGCTGCTCTTGGGCTTCCAGGAACAAACTTGAACTCTCAGTCCCTT
GCTGCAGACCAGCTATTGAAACTTATGAGTACTGTTGATCCCAAATTGAATCATGTAGCAGCTGGTCTTG
TTTCACCAAGTCTGAAGTCAGACACCTCTAGTAAAGAAATAGAGGAAGCCATGAAGAGAGTGCGTGAAGC
CCAGTCCCTGATTTCTGCCGCTATTGAGCCAGACAAGAAGGAAGAAAAGAGAAGACATTCGAGATCAAGA
TCTCGCTCGAGGAGGAGGAGGACCCCCTCATCCTCCAGACACAGGCGGTCACGAAGCCGGTCAAGGAGGC
GGTCACACTCCAAATCCAGGAGTAGAAGGAGATCCAAAAGTCCAAGACGGAGACGATCTCATTCCCGAGA
GAGGGGTAGAAGGTCAAGGAGCACATCCAAAGCCAGAGACAAAAAGAAAGAAGATAAAGAAAAGAAACGT
TCCAAAACTCCACCAAAAAGCTACAGCACAGCCAGACGCTCTCGGAGTGCAAGCAGAGAGAGAAGACGAC
GGCGAAGTAGGAGTGGTACAAGATCCCCTAAAAAGCCCAGGTCTCCTAAAAGAAAGCTGTCTCGCTCACC
ATCCCCAAGGAGACATAAAAAAGAGAAGAAGAAAGATAAGGACAAAGAAAGAAGCAGAGATGAAAGGGAA
CGATCAACAAGTAAAAAGAAGAGGAGCAAAGACAAGGAGAAGGAGCGAGAAAGGAAGTCTGAGAGTGACA
AAGACGTCAAACAGGTGACTCGGGATTATGATGAAGAGGAGCAAGGCTATGACAGTGAGAAGGAAAAGAA
AGAGGAGAAGAGACCAACAGAAGCAGTGTCCCCTAAAACAAAGGAGTGCTCTGTGGAGAAGGGGGTGGGC
GACCTTCGAGAGTCCAAAGTGAACGGGGATGATCACCACGAAGAAGACATGGATATGAGTGACTGA

Translation (511 aa):
MSSPPAPGTAGPTSPSVALTNLALRRNFFREAARAMSSTAVVPSAPGPGPGPSGGPGGGTEVIQVTNVSP
SASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE
GVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQSL
AADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSR
SRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKARDKKKEDKEKKR
SKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERE
RSTSKKKRSKDKEKERERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKRPTEAVSPKTKECSVEKGVG
DLRESKVNGDDHHEEDMDMSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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