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Report for CCDS51127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51127.1 Public Mus musculus 4 Ccnc 23 108 98 CCDS HistoryNCBI Gene:51813Re-query CCDS DB by CCDS ID:51127.1Re-query CCDS DB by GeneID:51813See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065928.10 ENSMUSP00000069076.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065928.10Link to Ensembl Protein Viewer:ENSMUSP00000069076.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000065928Re-query CCDS DB by Protein ID:ENSMUSP00000069076
Original member Current member EBI ENSMUST00000108240.2 ENSMUSP00000103875.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108240.2Link to Ensembl Protein Viewer:ENSMUSP00000103875.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108240Re-query CCDS DB by Protein ID:ENSMUSP00000103875
Original member NCBI NM_001122982.2 NP_001116454.1 Updated not alive Link to Nucleotide Sequence:NM_001122982.2Link to Protein Sequence:NP_001116454.1Re-query CCDS DB by Nucleotide ID:NM_001122982Re-query CCDS DB by Protein ID:NP_001116454
Current member NCBI NM_001122982.3 NP_001116454.1 Accepted alive Link to Nucleotide Sequence:NM_001122982.3Link to Protein Sequence:NP_001116454.1Re-query CCDS DB by Nucleotide ID:NM_001122982Re-query CCDS DB by Protein ID:NP_001116454Link to BLAST:NP_001116454.1
Original member NCBI NM_001290422.1 NP_001277351.1 Updated not alive Link to Nucleotide Sequence:NM_001290422.1Link to Protein Sequence:NP_001277351.1Re-query CCDS DB by Nucleotide ID:NM_001290422Re-query CCDS DB by Protein ID:NP_001277351
Current member NCBI NM_001290422.2 NP_001277351.1 Accepted alive Link to Nucleotide Sequence:NM_001290422.2Link to Protein Sequence:NP_001277351.1Re-query CCDS DB by Nucleotide ID:NM_001290422Re-query CCDS DB by Protein ID:NP_001277351Link to BLAST:NP_001277351.1

Chromosomal Locations for CCDS 51127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 21727884 21727915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21730397 21730503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21732218 21732302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21732489 21732558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21735417 21735468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21740592 21740647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21741955 21741990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21742613 21742704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21743247 21743314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21746350 21746429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21746656 21746774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21747483 21747534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGCAGGGAACTTCTGGCAGAGCTCCCACTATTTGCAGTGGATTTTGGATAAACAAGATCTGTTGAAAG
AGCGCCAAAAGGACCTAAAGTTTCTCTCAGAAGAGGAGTATTGGAAGTTACAAATATTTTTTACAAATGT
TATCCAAGCATTAGGTGAACATCTTAAATTAAGACAACAAGTTATTGCTACTGCTACAGTCTATTTCAAG
AGATTCTATGCTAGGTATTCTCTGAAAAGTATAGATCCTGTATTAATGGCGCCTACATGTGTGTTTCTGG
CATCCAAAGTAGAGGAATTTGGTGTTGTCTCAAATACAAGATTGATTGCTGCTACTACTTCTGTATTAAA
AACTAGATTTTCATATGCTTTTCCAAAGGAATTTCCTTACAGGATGAATCATATACTAGAATGTGAATTT
TACCTCTTAGAATTAATGGACTGTTGCTTGATAGTGTATCATCCTTATAGACCTTTGCTCCAGTATGTGC
AGGACATGGGCCAGGAAGACGTGCTGCTTCCCCTTGCATGGAGGATAGTGAATGATACCTACAGGACGGA
TCTCTGTCTGCTGTACCCTCCGTTCATGATCGCTTTAGCTTGCCTACATGTAGCCTGTGTCGTACAACAG
AAAGATGCTAGACAGTGGTTTGCAGAACTTTCTGTGGATATGGAGAAGATTTTGGAAATAATCAGGGTTA
TTTTAAAACTGTATGAGCAGTGGAAGAATTTTGATGAGAGAAAAGAGATGGCAACTATTCTTAGTAAGAT
GCCGAAACCAAAACCACCTCCAAACAGAAGCTCCCTGAGTGACTCTCCACTAATGGCAGGGCCTGAAGCT
GCAAGATGA

Translation (282 aa):
MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFK
RFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAATTSVLKTRFSYAFPKEFPYRMNHILECEF
YLLELMDCCLIVYHPYRPLLQYVQDMGQEDVLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQ
KDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNRSSLSDSPLMAGPEA
AR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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