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Report for CCDS51169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51169.1 Public Mus musculus 4 Hrct1 23 108 98 CCDS HistoryNCBI Gene:100039781Re-query CCDS DB by CCDS ID:51169.1Re-query CCDS DB by GeneID:100039781See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095109.4 ENSMUSP00000092727.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095109.4Link to Ensembl Protein Viewer:ENSMUSP00000092727.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095109Re-query CCDS DB by Protein ID:ENSMUSP00000092727
Original member Current member NCBI NM_027511.1 NP_081787.1 Accepted alive Link to Nucleotide Sequence:NM_027511.1Link to Protein Sequence:NP_081787.1Re-query CCDS DB by Nucleotide ID:NM_027511Re-query CCDS DB by Protein ID:NP_081787Link to BLAST:NP_081787.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081787.1 109 Q9D6B9 109 100% 0 0

Chromosomal Locations for CCDS 51169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43727362 43727691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGTTAGGCCTTCTGGGGAACACGACCCTTGTGTGCTGGATCACGGGCACAGCACTGGCGTTTTTGATGT
TGCTGTGGCTGATGGCCCTCTGCCTTTTCCACAGATCACAGGAGCATGACGTGGAGAGAAACCGAGTCCG
ACAAGCCCGGCCTCGACTCTTCCATGGCCGGCGCCTGCGTCTCCCAAGACTTGTTCACCATCACCACCAT
CACCATGTGACCGGGGTGACCAGTGTGGGCGTTCACCACCACCATCACCATTCTCCCCATCGTCTCCACC
ACCACAAGCACCACCACCGCCACCACCATGCTCATGGAGCCCGCCGCTGA

Translation (109 aa):
MLGLLGNTTLVCWITGTALAFLMLLWLMALCLFHRSQEHDVERNRVRQARPRLFHGRRLRLPRLVHHHHH
HHVTGVTSVGVHHHHHHSPHRLHHHKHHHRHHHAHGARR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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