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Report for CCDS51175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51175.1 Public Mus musculus 4 Grin3a 23 108 98 CCDS HistoryNCBI Gene:242443Re-query CCDS DB by CCDS ID:51175.1Re-query CCDS DB by GeneID:242443See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076674.3 ENSMUSP00000075970.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076674.3Link to Ensembl Protein Viewer:ENSMUSP00000075970.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000076674Re-query CCDS DB by Protein ID:ENSMUSP00000075970
Original member Current member NCBI NM_001033351.2 NP_001028523.1 Accepted alive Link to Nucleotide Sequence:NM_001033351.2Link to Protein Sequence:NP_001028523.1Re-query CCDS DB by Nucleotide ID:NM_001033351Re-query CCDS DB by Protein ID:NP_001028523Link to BLAST:NP_001028523.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028523.1 1115 A2AIR5-2 1115 100% 0 0

Chromosomal Locations for CCDS 51175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 49665226 49665565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49670024 49670100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49672473 49672637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49702719 49702870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49714130 49714245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49719247 49719392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49770419 49771466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49792428 49793032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49844383 49845081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3348 nt):
ATGAGGAGACTGAGTTTGTGGTGGCTGCTGAGCAGGGTCTGTCTGTTGCTGCCTCCGCCCTGTGCACTGG
TGCTGGCCGGGGTGCCCAGCTCCTCCTCGCACCCGCAACCCTGCCAGATCCTCAAGCGCATCGGACACGC
GGTGAGGGTGGGCGCGGTGCACTTGCAACCCTGGACCACGGCCCCACGCGCAGCCAGTCGCGCTCAGGAC
GGCGGCAGGGCGGGTGCCCAGAGGGATGAGCCAGAGTCGGGGACGTGGCGGCCACCGGCGCCCTCGCAAG
GCGCACGTTGGTTGGGGAGCGCCCTGCATGGCCGGGGTCCACCCGGCTCCCGCAAGCTCGGGGAGGGCGC
CGGGACCGAGACCCTGTGGCCGCGGGATGCCCTACTGTTCGCTGTGGAAAACCTGAACCGTGTGGAAGGG
CTCCTTCCCTACAACCTGTCTTTGGAAGTAGTGATGGCCATCGAGGCGGGCCTGGGCGACCTGCCACTTA
TGCCTTTCTCTTCCCCAAGCTCACCGTGGAGCAGTGACCCTTTCTCCTTTCTGCAGAGCGTGTGCCACAC
CGTAGTGGTACAAGGGGTTTCAGCGCTGCTGGCCTTCCCCCAGAGCCAGGGCGAAATGATGGAGCTGGAC
TTGGTCAGTTCTGTCCTGCACATCCCAGTGCTCAGCATAGTGCGCCACGAGTTTCCGCGGGAGAGTCAGA
ATCCCCTGCACCTACAGCTGAGTTTAGAAAATTCACTAAGTTCTGATGCTGATGTCACTGTCTCAATCCT
GACCATGAACAACTGGTACAATTTTAGCTTGTTGCTATGCCAGGAAGACTGGAATATCACCGACTTCCTA
CTCCTTACAGAGAATAACTCCAAGTTCCACCTCGAGTCTATCATCAACATCACTGCTAACCTGTCCTCCA
CAAAGGACCTTCTAAGTTTCCTGCAGGTCCAGCTGGAAAACATTAGGAACAGCACACCCACAATGGTGAT
GTTTGGCTGTGACATGGGGAGCATCCGGCAGATATTTGAAATGTCCACACAGTTTGGGCTATCACCTCCT
GATCTTCACTGGGTTTTAGGAGACTCACAGAATGTGGAGGAGCTGAGGACAGAAGGCCTGCCCTTAGGGC
TCATTGCTCATGGAAAAACCACACAGTCTGTCTTTGAGTACTATGTTCAGGATGCCATGGAGTTGGTTGC
AAGAGCTGTAGCCACAGCCACCATGATCCAGCCAGAACTTGCTCTCCTTCCCAGCACAATGAACTGCATG
GATGTGAAAACCACAAATCTCACTTCTGGACAATATTTATCAAGGTTTTTAGCCAACACCACTTTCAGAG
GTCTCAGTGGTTCCATCAAAGTAAAGGGATCCACCATCGTCAGCTCAGAAAACAACTTTTTCATCTGGAA
CTTGCAGTATGACCCTATGGGAAAGCCAATGTGGACTCGCCTGGGTAGCTGGCAAGGGGGAAGGATTGTC
ATGGACTCGGGAATATGGCCAGAGCAGGCCCAGAGGCACAAAACCCACTTCCATCACCCAAACAAGTTAC
ACTTGAGAGTGGTGACACTGATTGAACATCCATTTGTTTTCACGAGAGAAGTAGATGATGAAGGCTTATG
CCCTGCTGGACAACTCTGTCTAGACCCTATGACTAATGACTCTTCCATACTGGATAGCCTGTTTAGCAGC
CTACATAGCAGTAATGATACAGTGCCAATCAAGTTCAAGAAGTGCTGCTATGGGTATTGCATTGATCTAC
TGGAACAGTTAGCAGAAGACATGAACTTTGACTTTGACCTCTATATTGTAGGGGATGGAAAGTATGGAGC
TTGGAAAAATGGTCACTGGACTGGGCTGGTTGGTGATCTCCTGAGTGGAACAGCCAACATGGCAGTCACT
TCTTTCAGCATCAATACTGCAAGAAGCCAAGTGATAGATTTCACCAGCCCTTTCTTCTCAACCAGTTTGG
GCATCTTAGTGAGGACTCGAGACACAGCAGCTCCCATTGGAGCCTTCATGTGGCCACTCCACTGGACCAT
GTGGCTGGGGATTTTCGTGGCTCTACATATCACTGCCATCTTCCTCACTCTGTATGAATGGAAGAGCCCC
TTTGGTATGACTCCTAAAGGGAGGAACAGAAACAAAGTCTTCTCCTTCTCCTCAGCCTTGAATGTCTGCT
ATGCCCTTCTGTTTGGCAGAACAGCAGCCATCAAACCCCCTAAATGCTGGACTGGAAGATTTCTGATGAA
TCTTTGGGCCATTTTCTGTATGTTTTGCCTTTCTACATACACAGCGAACTTGGCTGCTGTCATGGTAGGT
GAGAAGATCTATGAAGAACTTTCTGGAATCCATGACCCTAAGCTTCATCATCCTTCTCAAGGTTTTCGTT
TTGGAACTGTCCGGGAAAGCAGTGCTGAGGACTATGTACGGCAGAGCTTCCCAGAGATGCATGAGTACAT
GAGAAGGTACAATGTACCAGCCACCCCTGATGGAGTGCAGTACCTGAAGAATGATCCAGAGAAACTAGAT
GCCTTCATCATGGACAAAGCCCTTCTGGATTATGAAGTGTCAATAGATGCTGACTGCAAGCTTCTGACCG
TAGGAAAGCCATTTGCCATTGAAGGCTATGGCATTGGTCTCCCTCCCAACTCTCCGTTGACCTCTAACAT
ATCTGAGCTCATCAGTCAGTACAAGTCTCATGGGTTTATGGATGTGCTTCATGACAAGTGGTACAAGGTG
GTTCCCTGCGGAAAGAGAAGCTTTGCTGTCACTGAGACTTTGCAAATGGGCATCAAGCATTTCTCTGGAC
TCTTCGTGCTGCTGTGCATAGGATTCGGTCTCTCCATCCTGACAACCATTGGTGAACACATAGTGTACAG
ACTGCTGCTACCACGAATCAAAAACAAATCCAAGCTGCAGTACTGGCTGCACACCAGTCAGAGGTTTCAC
AGAGCATTAAACACATCATTTGTAGAAGAAAAGCAGCCATGTTCCAAGACAAAACGTGTGGAAAAGAGGT
CCAACATGGGACCCCAGCAGCTCATGGTATGGAATACTTCCAATCTGAGTCACGACAACCAACGAAAATA
CATCTTTAATGATGAGGAAGGACAAAACCAGCTGGGTACCCAGACCCATCAGGACATCCCTCTCCCTCCA
AGGAGAAGAGAGCTCCCTGCTTCACTGACCACCAATGGGAAAGCAGACTCCCTCAATGTAGCTCGGAACT
CCGTGATGCAGGAACTCTCCGAGTTGGAGAAGCAGATCCAAGTGATCCGCCAGGAGCTGCAGTTGGCCGT
AAGCAGGAAGACAGAGCTTGAGGAGTATCAAAGGACGAACCGGACTTGTGAATCCTAG

Translation (1115 aa):
MRRLSLWWLLSRVCLLLPPPCALVLAGVPSSSSHPQPCQILKRIGHAVRVGAVHLQPWTTAPRAASRAQD
GGRAGAQRDEPESGTWRPPAPSQGARWLGSALHGRGPPGSRKLGEGAGTETLWPRDALLFAVENLNRVEG
LLPYNLSLEVVMAIEAGLGDLPLMPFSSPSSPWSSDPFSFLQSVCHTVVVQGVSALLAFPQSQGEMMELD
LVSSVLHIPVLSIVRHEFPRESQNPLHLQLSLENSLSSDADVTVSILTMNNWYNFSLLLCQEDWNITDFL
LLTENNSKFHLESIINITANLSSTKDLLSFLQVQLENIRNSTPTMVMFGCDMGSIRQIFEMSTQFGLSPP
DLHWVLGDSQNVEELRTEGLPLGLIAHGKTTQSVFEYYVQDAMELVARAVATATMIQPELALLPSTMNCM
DVKTTNLTSGQYLSRFLANTTFRGLSGSIKVKGSTIVSSENNFFIWNLQYDPMGKPMWTRLGSWQGGRIV
MDSGIWPEQAQRHKTHFHHPNKLHLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSILDSLFSS
LHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVT
SFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAFMWPLHWTMWLGIFVALHITAIFLTLYEWKSP
FGMTPKGRNRNKVFSFSSALNVCYALLFGRTAAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVG
EKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLD
AFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKV
VPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIKNKSKLQYWLHTSQRFH
RALNTSFVEEKQPCSKTKRVEKRSNMGPQQLMVWNTSNLSHDNQRKYIFNDEEGQNQLGTQTHQDIPLPP
RRRELPASLTTNGKADSLNVARNSVMQELSELEKQIQVIRQELQLAVSRKTELEEYQRTNRTCES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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