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Report for CCDS51216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51216.1 Public Mus musculus 4 Cntln 23 108 98 CCDS HistoryNCBI Gene:338349Re-query CCDS DB by CCDS ID:51216.1Re-query CCDS DB by GeneID:338349See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169371.8 ENSMUSP00000130491.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169371.8Link to Ensembl Protein Viewer:ENSMUSP00000130491.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169371Re-query CCDS DB by Protein ID:ENSMUSP00000130491
Original member NCBI NM_175275.4 NP_780484.2 Updated not alive Link to Nucleotide Sequence:NM_175275.4Link to Protein Sequence:NP_780484.2Re-query CCDS DB by Nucleotide ID:NM_175275Re-query CCDS DB by Protein ID:NP_780484
Current member NCBI NM_175275.5 NP_780484.2 Accepted alive Link to Nucleotide Sequence:NM_175275.5Link to Protein Sequence:NP_780484.2Re-query CCDS DB by Nucleotide ID:NM_175275Re-query CCDS DB by Protein ID:NP_780484Link to BLAST:NP_780484.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780484.2 1396 A2AM05-4 1396 100% 0 0

Chromosomal Locations for CCDS 51216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 84884465 84884824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84888643 84888731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84947558 84947642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84956276 84956410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84957000 84957179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84971131 84971264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84973863 84974025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84979324 84979521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84994629 84994781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84996455 84996580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85004923 85005044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85006405 85006524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85033788 85033888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85046303 85046394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85049604 85050136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85063181 85063355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85067480 85067573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85067657 85067880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85092637 85092828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85096750 85096847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85098349 85098475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85100258 85100395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85100714 85100899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85115265 85115450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85118442 85118519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85130642 85130743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4191 nt):
ATGGCGGCGCGCTCGCCGTCTTCCTCGCCGCCTCCGCCCCCGGTGCGGCGGTCCAGCCGGCGGTCCCTGC
GCGTCGGGCGCGGAGCCGAAGTGCACGCTGTGCGCAGCGAGGCCTCGGGTCTGGCGGGCGCCGCGAGGGA
GGTCGTCGCGGATAAAAGCGACTTACTTTGGAGGGGCGAAGAAGGGTCAGGGGGACGGCGAGGGTCGGGG
CGGGCCGGGGCCGCTGTCGCTCCTGTCGCCAGCGCGCCCGCGGGTTCCTGGTGGCCAGAGGGCCTCTCCT
CGGAGGAGGCGAAGGCGACGCGATCGCAGCTGCTGGAGGAAGAGCTGAGCAGCCTAAAGGAGGAGCTGGC
CCTGTGTCAGGCTGACAAGGAATTTGTATGGTCTCTGTGGAGGCGTCTTCAGGCAACAAACCCAGATCTC
ACTCAAACTGTCAGTTTGGTTGTGGAAAGAGAAAAACAGAAATCTGAAGCCAAAGACAGAAAAGTTCTGG
AAATTTTACAAGTCAAAGATTCTAAAATACAAGAATTGGAGCAGACTGAATCTGTACTAAAACAGGAACT
ACATGACCTTGTAAAACTGAAGACTCTGGTTGATGAAGAAAATGCTTTCTTGAGGAAAGAATTATGTGAT
TTACAGAAGAAATTTAAAGATAAAAGCCAAGAAGTGAAGGACGCCAAGGAGTGTGTACAGAGTAAAGAAG
AGCAAAACAGATTGGTTATAAAAAACCTGGAAGAGGAAAATGAGAGATTACGAACACGCTGCACTGACCT
GCTAAATGACCTGGAGAAACTGAGGAACCAGGAAGCACACTGGAGAAAAGAGAAACACAGTGTGGACACG
AGAGTAAAGGTCCTTGAAGAAAATTTGATTGAAGCAAAGAAAGAAATTGAGTCAGCACAGACTAAATATA
ATGTTGTGTCACAACAGCTGAATAACAAACAGGCTGAACTTCTCCAAAAAGATATGGATATTACATTGAT
CAGGAAAGAGCTGCAGGAGCTGCAGAACGTGTACAAGCAGAACAGTGCCCACACAGCCCAGCAAGCAGAC
CTGATCCAGCAGCTCCAGGCTCTCAACATGGACACGCAGAAAGTCCTGAGGAACCAGGAAGACGTCCACA
CGGCCGAGAGCATGTCATACCAAAAACTTTATAATGAATTACATATGTGTTTTGAAACTACAAAATCAAA
TGAAGTTATGCTCCGACAAAGTGTTGTTAATCTTCAAGGCCAACTGTTTCAAAAAGAACAAGAAAATGTA
AAATTAAAAGAAAAACTTGAGGAATCACAAGGAACAGCACCCTCTTTATCACCACACGACAGTGATTCAA
GCCACTCAGGAAAGGCACCGTTATCAACCTTGGAAACATTGATGATCTCACAGAAGTCTGAAATTGAATA
TTTACAGAAGAAACTGAAAGTGGCAAACGAAAAGTTGATGGCGAATAGATCTTGTGACCAGGATTTCTCA
GAGAAGGGGACTGAAGGAAAACACAAGGAACCACCTGTGAAACGCTCAAGGTCTTTGTCCCCAAAGAGCA
GTTTCATGGGCTCCGAGGAGCTAAGGAAGCTTAAAAAGGCTGAAAGAAAGATTGAAAACTTGGAGAAGAC
GCTACAGCTAAAGAGCCAAGAAAATGATGAGCTAAGAGATGCCCATGAAAAACGCAAGGAGAGACTACAG
ATGTTACACACCAACTACAGGGCAGTAAAAGAGCAATTAAAACAGTGGGAAGAAGACAGTGGCATGGCTG
AATCCAGACAAATGAAGCGAGCAGAGCCTCACCAGCTCCGACAAGAAGACTCTGATGCTGTGTGGAACGA
ACTGGCATATTTCAAAAGAGAAAACCAGGAGTTGATGGTTCAAAAGATGACTCTTCAAGATGAATTGGAT
GAGCTTAAAATGCATATGTCCATTGATAAAACAACAATACAGGAATTGAATAGGTGCATGGCAGAGAAAA
GAGAAGAACAACTCTTTAGACAGCATGAAGACGCTGAGGTCAAGAAGAGTACTCCAGAGAAGAATGAGAA
AGCAATATCGGAAGAGACATTACAGAAGGTCATTGAGTTGGAAAATCGGCTAAAATCTTTTGAGAAAAAC
TCAAGAAAATTAAAAGAAGAGAGTAAGAGATTAAAGAAAGAGAATGATTTCCTTAAATCCCACTTAAAAC
ACTATCAAGAAGACTCGGAGGCGAGAGAGAAGGAGCTAGAACAACTACTGAGGGTGAGCAAAGATGTAGA
ACATGACAAAAGTGAGCTTCAAACAAAAATCACTGCTCTGGAGACAGAAGTCACTACCCTGAGGAGACAA
GTGACAGAAGCTAAGGCTTTGAGAGGCAAAGATGAAGAGGTGGTGTGCCCAGAGGAAAGAGCACACCGCC
CAACAGACAAAGCTAAATCTGAGATGGCCACCACAGATGTGAGAGCCCGGCGCTGTGACTGCAAGACAGC
CACTACCAAGGTGAAATTTAAAGCTGCCAAGAGAAAGTGCTCAGTGGGTCGCCACCACACAGTTCTCAAT
CACTCCATCAAGGTTATGAGCCACGTGGAGAACCTCAGCAAGGACGGCTGGGAGGATGTGAGTGAAGGCA
GTGATTCTGAAACACAAACCTTTCAAAATTTGGGAACAATTATTGTGGAAACATCCCAGAATATAAGCCC
TATCGAAGATGGTAGAAACCAGAAAGAAATTGACCAAACAGAAGGCAGCTGTGCTCAACAAAGAGCTATG
CAGACGTACTCATGTGAGGACATCAAGGCCCCGCAGAGTATTTCTCATAATAAGAACACCAAGAAAATGA
CATTTCAAAAGAAGAGTGGAAGCCTGCAGAAGAGCTTGCACAGTGCCCTTCCTGCCAGAGTTAACAGAGA
AAAGTGCAAAAATCTACCTGCCCAGAAATCCAGTAGCAGCACCATTTCATTACGAGAACGGATCGTATCC
TTGCAGCAACAGAACAGTTTGCTTCAGAACGCCAGGAGAGCAGCAGAGGCGTCTGCTAAGGAGTATAAAG
AAGCGAACGAGAAGCTCCTCCATCAACAGCAGGTCAGCGATCACCGATTCCAGACCAGCAGACAGACAAT
AAAGAAGCTCACTCTTGATTTAGCTGAACTTCGAAAAGAAAAAGAAGATTTGTTGAAGAAAGTGGAGTCT
TCATCTGACATCATGAGCTTGGCAGAGGAAGTTTCTAGGATAATGGCTCCGCAGATAAAGGTCACCACAC
TGGGTCCTTCAAGAAGCATGGATTTGGAAATGAAGCAACTGCAGTGTAAACTAAAGAATGCAACTAATGA
GCTCACTAAACAGTCATCAAATGTGAAGTCTCTGAGAATGGAACTCCTGGCAAAGGATGACCACATAAAG
GAGATGCACGAAAGGACGTCTCGAATGGAGAGGGATATAACCATGAAAAGACACCTGATCGAGGACTTGA
AATTTCGACAGAAAGTAAATTCAGAAAGTAATGAGAGTTTTAATGAAATGTTAGAAACTCTTGAAAAAAA
GGTGAAGTCATTAACTGAAGAATGTTCCAACAAGAAGGTATCAGTAGATTCACTAAAGCAAAGACTTAAC
GTTGCTGTGAAAGAGAAGTCACAGTACGAGCAGATGTATCAGAAAACTAAAGAGGAGCTAGAAAAAAAGG
ATCTCAAGATGAGTGTCCTGATATCAAAACTAAATGACACAGAGACAGCCATGGCTCAGATTGAGACGGC
GGCTTCAGAGCAGCTCCAGGGCTTAGCACTGCAGAGCGAGCAGGTCCTGGAAGGCGCGCAGAAGAAGCTG
CTGTCCGCCAATGAGAAGATTGAAGAGTTCACCGTCTTTGTGAAGGCTTTGGTCAATGAGTTACAAAGTG
ATGTCCATGGGACAAGACATCAAATCAGAGAGCTTAAGAAGATGCAAAAAAGCAGACATGCTTGTAAAAC
CTCAACGCATAAAGCCCAGACCTTGGCAGCTTCCATCCTGAACATCTCACGGTCAGACCTAGAGGAGATA
CTGGACACCGAGGATGAACTGGAAATTGAGAAGACAAAGATAGACATTGAAAATGACAAGGAGTGGATGT
TGTACATTCAGAAACTTCTTGAAGGACAGCTTCCGTTTGCATCATATTTACTCGAAGCAGTACTGGAGAA
AATAAAGGAAAACAAGAAACTAACTGAAGGATATTTCACAGTGATGAAAGACACTAAATAA

Translation (1396 aa):
MAARSPSSSPPPPPVRRSSRRSLRVGRGAEVHAVRSEASGLAGAAREVVADKSDLLWRGEEGSGGRRGSG
RAGAAVAPVASAPAGSWWPEGLSSEEAKATRSQLLEEELSSLKEELALCQADKEFVWSLWRRLQATNPDL
TQTVSLVVEREKQKSEAKDRKVLEILQVKDSKIQELEQTESVLKQELHDLVKLKTLVDEENAFLRKELCD
LQKKFKDKSQEVKDAKECVQSKEEQNRLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDT
RVKVLEENLIEAKKEIESAQTKYNVVSQQLNNKQAELLQKDMDITLIRKELQELQNVYKQNSAHTAQQAD
LIQQLQALNMDTQKVLRNQEDVHTAESMSYQKLYNELHMCFETTKSNEVMLRQSVVNLQGQLFQKEQENV
KLKEKLEESQGTAPSLSPHDSDSSHSGKAPLSTLETLMISQKSEIEYLQKKLKVANEKLMANRSCDQDFS
EKGTEGKHKEPPVKRSRSLSPKSSFMGSEELRKLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLQ
MLHTNYRAVKEQLKQWEEDSGMAESRQMKRAEPHQLRQEDSDAVWNELAYFKRENQELMVQKMTLQDELD
ELKMHMSIDKTTIQELNRCMAEKREEQLFRQHEDAEVKKSTPEKNEKAISEETLQKVIELENRLKSFEKN
SRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITALETEVTTLRRQ
VTEAKALRGKDEEVVCPEERAHRPTDKAKSEMATTDVRARRCDCKTATTKVKFKAAKRKCSVGRHHTVLN
HSIKVMSHVENLSKDGWEDVSEGSDSETQTFQNLGTIIVETSQNISPIEDGRNQKEIDQTEGSCAQQRAM
QTYSCEDIKAPQSISHNKNTKKMTFQKKSGSLQKSLHSALPARVNREKCKNLPAQKSSSSTISLRERIVS
LQQQNSLLQNARRAAEASAKEYKEANEKLLHQQQVSDHRFQTSRQTIKKLTLDLAELRKEKEDLLKKVES
SSDIMSLAEEVSRIMAPQIKVTTLGPSRSMDLEMKQLQCKLKNATNELTKQSSNVKSLRMELLAKDDHIK
EMHERTSRMERDITMKRHLIEDLKFRQKVNSESNESFNEMLETLEKKVKSLTEECSNKKVSVDSLKQRLN
VAVKEKSQYEQMYQKTKEELEKKDLKMSVLISKLNDTETAMAQIETAASEQLQGLALQSEQVLEGAQKKL
LSANEKIEEFTVFVKALVNELQSDVHGTRHQIRELKKMQKSRHACKTSTHKAQTLAASILNISRSDLEEI
LDTEDELEIEKTKIDIENDKEWMLYIQKLLEGQLPFASYLLEAVLEKIKENKKLTEGYFTVMKDTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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