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Report for CCDS51244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51244.1 Public Mus musculus 4 Pde4b 23 108 98 CCDS HistoryNCBI Gene:18578Re-query CCDS DB by CCDS ID:51244.1Re-query CCDS DB by GeneID:18578See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097949.10 ENSMUSP00000095561.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097949.10Link to Ensembl Protein Viewer:ENSMUSP00000095561.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000097949Re-query CCDS DB by Protein ID:ENSMUSP00000095561
Original member Current member NCBI NM_001177981.1 NP_001171452.1 Accepted alive Link to Nucleotide Sequence:NM_001177981.1Link to Protein Sequence:NP_001171452.1Re-query CCDS DB by Nucleotide ID:NM_001177981Re-query CCDS DB by Protein ID:NP_001171452Link to BLAST:NP_001171452.1

Chromosomal Locations for CCDS 51244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102590154 102590201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102590831 102590924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102595934 102596112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102597459 102597557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102597694 102597858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102599643 102599742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102601533 102601687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102601779 102601901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102602587 102602769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102604974 102605339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGCCTGAGGCAAACTATTTATTATCTGTTTCTTGGGGTTATATCAAGTTCAAAAGGATGCTGAACCGGG
AGCTGACACACCTCTCAGAGATGAGCAGATCAGGGAACCAGGTGTCTGAGTACATTTCAAACACGTTCTT
AGACAAGCAGAACGATGTGGAAATCCCATCTCCCACGCAGAAGGACAGGGAGAAGAAGAAGAAGCAGCAG
CTCATGACCCAGATAAGTGGAGTGAAGAAACTGATGCACAGCTCAAGCCTGAACAACACAAGCATCTCAC
GCTTCGGAGTCAACACGGAAAATGAGGATCATCTAGCCAAGGAGCTGGAAGACCTGAACAAATGGGGCCT
TAACATCTTCAATGTGGCTGGGTACTCACATAATCGGCCCCTTACGTGCATCATGTATGCAATATTCCAG
GAAAGAGACCTTCTGAAGACGTTTAAAATCTCATCTGACACCTTTGTAACCTACATGATGACTTTAGAAG
ACCATTACCATTCTGATGTGGCATATCACAACAGCCTGCATGCTGCTGACGTGGCCCAGTCAACTCACGT
TCTCCTTTCTACGCCGGCACTGGATGCTGTCTTCACAGACCTGGAAATCCTGGCTGCCATTTTTGCAGCT
GCCATCCATGATGTCGATCATCCTGGAGTCTCCAATCAGTTTCTCATCAATACAAATTCTGAACTTGCTT
TGATGTATAATGATGAATCTGTTCTGGAAAACCATCACCTTGCTGTGGGATTCAAATTGCTACAAGAGGA
ACACTGCGACATCTTTCAGAATCTTACCAAGAAGCAACGCCAGACACTCAGGAAAATGGTGATTGACATG
GTGTTGGCAACTGATATGTCCAAACACATGAGCCTCCTGGCAGACCTTAAAACAATGGTAGAAACCAAGA
AGGTGACAAGCTCCGGTGTTCTCCTCCTGGACAACTATACTGACCGGATACAGGTTCTTCGCAACATGGT
ACACTGTGCAGACCTGAGCAACCCCACCAAGTCCTTGGAATTGTATCGGCAATGGACCGATCGTATCATG
GAGGAGTTTTTCCAGCAGGGAGACAAAGAACGGGAGAGGGGAATGGAGATTAGCCCAATGTGTGATAAGC
ACACAGCTTCTGTGGAAAAATCCCAGGTTGGTTTCATTGACTACATTGTCCATCCACTGTGGGAGACCTG
GGCAGACCTGGTTCAACCGGATGCTCAAGATATTCTGGATACACTAGAAGATAACAGGAACTGGTACCAG
AGTATGATACCCCAGAGCCCTTCCCCGCCACTGGATGAGAGGAGCAGGGACTGCCAAGGCCTGATGGAGA
AGTTTCAGTTTGAACTGACCCTTGAGGAAGAGGATTCTGAGGGACCGGAAAAGGAGGGAGAAGGCCACAG
CTATTTCAGCAGCACAAAGACGCTTTGTGTGATTGATCCAGAGAACAGGGATTCTCTGGAAGAGACTGAC
ATAGACATTGCAACAGAAGACAAGTCTCCGATCGACACATAA

Translation (503 aa):
MPEANYLLSVSWGYIKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQ
LMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQ
ERDLLKTFKISSDTFVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAA
AIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEEHCDIFQNLTKKQRQTLRKMVIDM
VLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIM
EEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQ
SMIPQSPSPPLDERSRDCQGLMEKFQFELTLEEEDSEGPEKEGEGHSYFSSTKTLCVIDPENRDSLEETD
IDIATEDKSPIDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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