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Report for CCDS51305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51305.1 Public Mus musculus 4 Rnf19b 23 108 98 CCDS HistoryNCBI Gene:75234Re-query CCDS DB by CCDS ID:51305.1Re-query CCDS DB by GeneID:75234See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51305.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168461.7 ENSMUSP00000131373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168461.7Link to Ensembl Protein Viewer:ENSMUSP00000131373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168461Re-query CCDS DB by Protein ID:ENSMUSP00000131373
Original member Current member NCBI NM_029219.2 NP_083495.1 Accepted alive Link to Nucleotide Sequence:NM_029219.2Link to Protein Sequence:NP_083495.1Re-query CCDS DB by Nucleotide ID:NM_029219Re-query CCDS DB by Protein ID:NP_083495Link to BLAST:NP_083495.1

Chromosomal Locations for CCDS 51305.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129058271 129058896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129071737 129071942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129073502 129073643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129075570 129075732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129076162 129076276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129078907 129079047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129080342 129080549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129082747 129082878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129083728 129084190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2196 nt):
ATGGGCTCCGAGAAGGACTCCGAGTCGCCGCGCTCCACCTCGCTCCATGCGGCCGCCCCCGACCCTAAGT
GCCGCAGCGGCGGCCGGCGCCGGCGCCTCACCTTCCACAGCGTCTTCTCCGCCTCGGCCCGCGGCCGCCG
CGCCCGGACCAAGCCTCAGGCCGAACCGCCGCCCCCGGCTGCGCCGCCGCCGCCGCCGCCGCCCGCTCCG
GCCCCGGTTGAGGCTCAGGCCCCGCCGGTGGAAGCTCTGCCCTCCGAGCCCGCTGCCGAGGCTGAGGCGG
AGGCCGTGGCTGCCGGGCCGGAGGAGGACGAGGCGGCGGAGGGCGGCGGCGCGGAGGAGGTGGAGTGCCC
GCTGTGCCTGGTGCGCCTGCCGCCCGAGCGGGCCCCGCGCCTCCTCAGCTGCCCGCATCGCTCGTGCCGG
GACTGCCTCCGCCACTACCTGCGCCTGGAGATCAGCGAGAGCCGCGTGCCCATCAGCTGCCCCGAGTGCA
GCGAGCGGCTCAACCCACACGACATCCGTCTGCTGCTGGCCGACCCGCCGCTCATGCACAAGTACGAAGA
GTTCATGCTGCGCCGGTACCTGGCCTCGGACCCCGACTGCCGCTGGTGTCCGGCCCCTGACTGCGGTTAT
GCTGTTATTGCCTATGGCTGTGCCAGTTGCCCAAAGCTAACCTGTGAGAGGGAGGGCTGCCAGACTGAGT
TCTGCTACCACTGCAAGCAGATATGGCATCCAAACCAGACCTGCGATATGGCCCGTCAGCAGAGGGCTCA
GACTTTACGAGTTCGGACCAAGCACACTTCAGGTCTCAGTTACGGGCAAGAATCTGGACCAGATGACATC
AAGCCATGCCCACGATGCAGTGCTTACATTATCAAGATGAATGATGGGAGCTGTAACCACATGACCTGTG
CAGTGTGTGGCTGTGAATTCTGCTGGCTTTGCATGAAAGAGATCTCTGACTTGCATTACCTCAGTCCCTC
TGGCTGTACATTCTGGGGCAAGAAGCCATGGAGCCGCAAAAAGAAAATTCTTTGGCAGTTGGGCACATTG
ATCGGTGCTCCGGTGGGGATCTCACTCATTGCTGGCATTGCAATTCCCGCCATGGTCATCGGCATCCCTG
TATACGTGGGGAGAAAGATTCACAGCAGGTACGAGGGAAGGAAAACCTCCAAGCACAAGAGGAATTTGGC
TATCACAGGAGGAGTGACCTTGTCAGTCATTGCATCCCCAGTAATCGCTGCTGTTAGCGTTGGTATTGGT
GTCCCCATTATGCTGGCATATGTTTATGGGGTTGTGCCCATTTCTCTTTGCCGTGGAGGTGGCTGTGGAG
TTAGCACAGCCAATGGAAAGGGGGTAAAAATTGAGTTTGATGAAGATGATGGTCCAATCACAGTGGCAGA
TGCCTGGCGAGCCCTCAAGAACCCCAGCATCGGAGAAAGCAGCATTGAGGGCCTGACTAGTGTGCTGAGT
ACCAGCGGAAGCCCTACAGATGGACTCAGTGTCATGCAGGGACCATACAGCGAGACAGCCAGCTTCGCTG
CCCTCTCAGGGGGCACACTGAGTGGTGGTATTCTCTCCAGCGGCAAGGGAAAGTACAGCCGGTTAGAAGT
TCAAGCTGATGTCCAAAAGGAAATTTTCCCCAAAGACACAGCCAGTCTTGGTGCAATTAGCGACAGCGCA
AGCACTCGTGCTATGGCCGGTTCCATAATCAGTTCCTACAACCCACAGGACAGAGAGTGCAACAATATGG
AAATCCAAGTGGACATTGAAGCCAAACCAAGTCACTATCAGTTGGTGAGTGGCAGCAGCACAGAGGACTC
GCTCCATGTCCATGCTCAGGTGGCAGAGAAGGAAGAAGAGGGTAATGGTGCTGGTGGTGGCAGCGGTGGC
AGTGAAGACGATCCCCCTTACAAACACCAAAGCTGTGAACAGAAAGACTGCCTGGCCAGCAAGGCTTGGG
ACATCAGCCTGGCCCAGCCTGAGAGCATCCGCAGTGACCTGGAGAGCTCTGACACGCAGTCAGATGACGT
GCCAGACATCACCTCAGATGAGTGTGGCTCGCCCCGCTCCCATGCTGCAGCCTGCCCCTCCACCCCCCAA
GTCCACGGTGCACCGAGCCCAAGTGCCCACAAGAACCTCGCTGCTCCAGCTGAGGGCCAGACTGTCTTGA
AGTCAGAAGAGTATGAAGTGGAATGA

Translation (731 aa):
MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTFHSVFSASARGRRARTKPQAEPPPPAAPPPPPPPAP
APVEAQAPPVEALPSEPAAEAEAEAVAAGPEEDEAAEGGGAEEVECPLCLVRLPPERAPRLLSCPHRSCR
DCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGY
AVIAYGCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDI
KPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTL
IGAPVGISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSVGIG
VPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPSIGESSIEGLTSVLS
TSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLEVQADVQKEIFPKDTASLGAISDSA
STRAMAGSIISSYNPQDRECNNMEIQVDIEAKPSHYQLVSGSSTEDSLHVHAQVAEKEEEGNGAGGGSGG
SEDDPPYKHQSCEQKDCLASKAWDISLAQPESIRSDLESSDTQSDDVPDITSDECGSPRSHAAACPSTPQ
VHGAPSPSAHKNLAAPAEGQTVLKSEEYEVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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