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Report for CCDS5136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5136.1 Public Homo sapiens 6 RNF146 24 110 108 CCDS HistoryNCBI Gene:81847Re-query CCDS DB by CCDS ID:5136.1Re-query CCDS DB by GeneID:81847See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5136.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000608991.5 ENSP00000477168.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000608991.5Link to Ensembl Protein Viewer:ENSP00000477168.1Re-query CCDS DB by Nucleotide ID:ENST00000608991Re-query CCDS DB by Protein ID:ENSP00000477168
Original member Current member NCBI NM_001242844.2 NP_001229773.1 Accepted alive Link to Nucleotide Sequence:NM_001242844.2Link to Protein Sequence:NP_001229773.1Re-query CCDS DB by Nucleotide ID:NM_001242844Re-query CCDS DB by Protein ID:NP_001229773Link to BLAST:NP_001229773.1
Original member Current member NCBI NM_001242845.2 NP_001229774.1 Accepted alive Link to Nucleotide Sequence:NM_001242845.2Link to Protein Sequence:NP_001229774.1Re-query CCDS DB by Nucleotide ID:NM_001242845Re-query CCDS DB by Protein ID:NP_001229774Link to BLAST:NP_001229774.1
Original member Current member NCBI NM_001242846.2 NP_001229775.1 Accepted alive Link to Nucleotide Sequence:NM_001242846.2Link to Protein Sequence:NP_001229775.1Re-query CCDS DB by Nucleotide ID:NM_001242846Re-query CCDS DB by Protein ID:NP_001229775Link to BLAST:NP_001229775.1
Original member Current member NCBI NM_001242852.2 NP_001229781.1 Accepted alive Link to Nucleotide Sequence:NM_001242852.2Link to Protein Sequence:NP_001229781.1Re-query CCDS DB by Nucleotide ID:NM_001242852Re-query CCDS DB by Protein ID:NP_001229781Link to BLAST:NP_001229781.1
Original member Current member NCBI NM_030963.4 NP_112225.2 Accepted alive Link to Nucleotide Sequence:NM_030963.4Link to Protein Sequence:NP_112225.2Re-query CCDS DB by Nucleotide ID:NM_030963Re-query CCDS DB by Protein ID:NP_112225Link to BLAST:NP_112225.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229773.1 358 Q9NTX7-2 358 100% 0 0
NP_001229774.1 358 Q9NTX7-2 358 100% 0 0
NP_001229775.1 358 Q9NTX7-2 358 100% 0 0
NP_001229781.1 358 Q9NTX7-2 358 100% 0 0
NP_112225.2 358 Q9NTX7-2 358 100% 0 0

Chromosomal Locations for CCDS 5136.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 127286617 127287693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCTGGCTGTGGTGAAATTGATCATTCAATAAACATGCTTCCTACAAACAGGAAAGCGAACGAGTCCT
GTTCTAATACTGCACCTTCTTTAACCGTCCCTGAATGTGCCATTTGTCTGCAAACATGTGTTCATCCAGT
CAGTCTGCCCTGTAAGCACGTTTTCTGCTATCTATGTGTAAAAGGAGCTTCATGGCTTGGAAAGCGGTGT
GCTCTTTGTCGACAAGAAATTCCCGAGGATTTCCTTGACAAGCCAACCTTGTTGTCACCAGAAGAACTCA
AGGCAGCAAGTAGAGGAAATGGTGAATATGCATGGTATTATGAAGGAAGAAATGGGTGGTGGCAGTACGA
TGAGCGCACTAGTAGAGAGCTGGAAGATGCTTTTTCCAAAGGTAAAAAGAACACTGAAATGTTAATTGCT
GGCTTTCTGTATGTCGCTGATCTTGAAAACATGGTTCAATATAGGAGAAATGAACATGGACGTCGCAGGA
AGATTAAGCGAGATATAATAGATATACCAAAGAAGGGAGTAGCTGGACTTAGGCTAGACTGTGATGCTAA
TACCGTAAACCTAGCAAGAGAGAGCTCTGCTGACGGAGCGGACAGTGTATCAGCACAGAGTGGAGCTTCT
GTTCAGCCCCTAGTGTCTTCTGTAAGGCCCCTAACATCAGTAGATGGTCAGTTAACAAGCCCTGCAACAC
CATCCCCTGATGCAAGCACTTCTCTGGAAGACTCTTTTGCTCATTTACAACTCAGTGGAGACAACACAGC
TGAAAGGAGTCATAGGGGAGAAGGAGAAGAAGATCATGAATCACCATCTTCAGGCAGGGTACCAGCACCA
GACACCTCCATTGAAGAAACTGAATCAGATGCCAGTAGTGATAGTGAGGATGTATCTGCAGTTGTTGCAC
AGCACTCCTTGACCCAACAGAGACTTTTGGTTTCTAATGCAAACCAGACAGTACCCGATCGATCAGATCG
ATCGGGAACTGATCGATCAGTAGCAGGGGGTGGAACAGTGAGTGTCAGTGTCAGATCTAGAAGGCCTGAT
GGACAGTGCACAGTAACTGAAGTTTAA

Translation (358 aa):
MAGCGEIDHSINMLPTNRKANESCSNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRC
ALCRQEIPEDFLDKPTLLSPEELKAASRGNGEYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIA
GFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAGLRLDCDANTVNLARESSADGADSVSAQSGAS
VQPLVSSVRPLTSVDGQLTSPATPSPDASTSLEDSFAHLQLSGDNTAERSHRGEGEEDHESPSSGRVPAP
DTSIEETESDASSDSEDVSAVVAQHSLTQQRLLVSNANQTVPDRSDRSGTDRSVAGGGTVSVSVRSRRPD
GQCTVTEV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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