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Report for CCDS51434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51434.1 Public Mus musculus 5 Cdk5 23 108 98 CCDS HistoryNCBI Gene:12568Re-query CCDS DB by CCDS ID:51434.1Re-query CCDS DB by GeneID:12568See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030814.10 ENSMUSP00000030814.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030814.10Link to Ensembl Protein Viewer:ENSMUSP00000030814.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030814Re-query CCDS DB by Protein ID:ENSMUSP00000030814
Original member Current member NCBI NM_007668.4 NP_031694.1 Accepted alive Link to Nucleotide Sequence:NM_007668.4Link to Protein Sequence:NP_031694.1Re-query CCDS DB by Nucleotide ID:NM_007668Re-query CCDS DB by Protein ID:NP_031694Link to BLAST:NP_031694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031694.1 292 P49615 292 100% 0 0

Chromosomal Locations for CCDS 51434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24419376 24419462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24419600 24419680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24419783 24419843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24420259 24420328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24420493 24420589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24420731 24420805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24420955 24421050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24422332 24422388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24422498 24422558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24422648 24422715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24422798 24422886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24423449 24423485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGCAGAAATACGAGAAACTGGAGAAGATTGGGGAAGGCACCTATGGAACTGTGTTCAAGGCTAAAAACC
GG
GAAACTCATGAGATTGTGGCTCTGAAGCGTGTCAGGCTGGATGATGACGATGAGGGTGTGCCAAGTTC
A
GCCCTCCGGGAGATCTGTCTACTCAAAGAACTGAAGCACAAAAACATTGTCAGGCTTCATGATGTCCTG
CAT
AGTGACAAGAAGCTGACACTGGTTTTTGAGTTCTGTGATCAGGACCTGAAGAAATATTTCGACAGCT
GC
AATGGTGACCTGGACCCTGAGATTGTGAAGTCATTCCTCTTCCAGCTGCTGAAAGGCCTGGGATTCTG
T
CACAGCCGCAACGTGCTACATAGGGACCTGAAGCCCCAGAACCTGCTCATAAACAGGAATGGGGAGTTG
AAA
TTGGCTGATTTTGGCCTGGCCCGAGCCTTTGGTATCCCCGTCCGCTGCTACTCTGCTGAGGTGGTCA
CG
CTGTGGTACCGCCCACCGGATGTCCTCTTTGGGGCCAAGCTGTACTCCACGTCCATCGACATGTGGTC
A
GCCGGCTGCATCTTTGCAGAGCTGGCTAATGCAGGACGACCTCTCTTCCCTGGCAATGATGTGGATGAC
CAG
CTGAAGAGGATCTTCCGACTGCTAGGGACACCGACTGAGGAACAATGGCCTGCCATGACCAAGCTGC
CA
GACTATAAGCCCTACCCAATGTACCCAGCTACAACATCCTTGGTGAACGTCGTGCCCAAGCTCAATGC
C
ACGGGGAGGGACCTGTTGCAGAACCTATTGAAGTGTAACCCTGTGCAGCGCATCTCAGCAGAGGAGGCC
TTG
CAGCACCCCTACTTCTCTGACTTCTGTCCCCCATAG


Translation (292 aa):
MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVL
H
SDKKLTLVFEFCDQ
DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGEL
K
LADFGLARAFGIPVRCYSAE
VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDD
Q
LKRIF
RLLGTPTEEQWPAMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA
L
QHPYFSDFCPP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser