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Report for CCDS51567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51567.1 Public Mus musculus 5 Mrpl1 23 108 98 CCDS HistoryNCBI Gene:94061Re-query CCDS DB by CCDS ID:51567.1Re-query CCDS DB by GeneID:94061See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121477.1 ENSMUSP00000112451.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121477.1Link to Ensembl Protein Viewer:ENSMUSP00000112451.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121477Re-query CCDS DB by Protein ID:ENSMUSP00000112451
Original member Current member NCBI NM_001039084.1 NP_001034173.1 Accepted alive Link to Nucleotide Sequence:NM_001039084.1Link to Protein Sequence:NP_001034173.1Re-query CCDS DB by Nucleotide ID:NM_001039084Re-query CCDS DB by Protein ID:NP_001034173Link to BLAST:NP_001034173.1

Chromosomal Locations for CCDS 51567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 96210163 96210193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96213787 96213910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96223771 96224032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96226285 96226368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96227680 96227751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96231681 96231792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96238839 96238984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGCGGCGGCCGTAAGGTGCCTCCGTAGAGTCTTGATACATCATCAAAGGCATTGTCTTTGCAAGATGG
CTTCCCAGGCATCTCTTTACCCTTGTTCTGTGAACAGTCTCTTGCACAACAGACATTTTGCTGCTGCTGC
TGCTGCTGCTACAAAGCCTGCAAGAAAAATTAAAAAAGGTGCCAAGGAAAAGACATCAGATGAAAAACCA
GTAGATGATATAGAGAAAATAAAGTCATATACGTACATGGAAAGTGATCCTGAAGATGATGTCTACTTAA
AACGCTTATACCCACGGCGGATCTATGAAGTAGAGAAAGCTATTCACTTACTTAAGAAGTTTCAAGTTCT
GGACTTTACCAATCCAAAGCAAGGTGTTTATCTTGACTTAACATTAGATATGGCATTGGGGAAAAAGAAA
ACAGTGGAGCCATTTGCCAGTGTTATTGCTTTACCACACCTCTTCTCCTCAGAAGTCAACAAGGTTGCTG
TGTTTACAGCGAACGCATCAGAAATTAAAATAGCAGAAGAAAATGGAGCTGCGTTTGCAGGAGGAACAGA
TCTGGTTAAGAAGATCATGGATGACGAGGTTGTTGTGGACTTTTATGTAGCTGTCCCAGAAATAATGGGT
GAACTTAACCCTTTAAGGAAGAAACTGAAAAAAAGATTTCCAAAGGCTACTAGAAATTCCATTGGTCGTG
ACATCCCCAAAATGCTTGAATTATTTAAAACGGCACATGAAATTATGGTAGATGAAGAAAGACAGAACTT
CCTCAGCACCAAAATAGCAACAGTAAGTTATAGCTGCATCCCTTGTGCAGATGCCCCGTAA

Translation (276 aa):
MAAAVRCLRRVLIHHQRHCLCKMASQASLYPCSVNSLLHNRHFAAAAAAATKPARKIKKGAKEKTSDEKP
VDDIEKIKSYTYMESDPEDDVYLKRLYPRRIYEVEKAIHLLKKFQVLDFTNPKQGVYLDLTLDMALGKKK
TVEPFASVIALPHLFSSEVNKVAVFTANASEIKIAEENGAAFAGGTDLVKKIMDDEVVVDFYVAVPEIMG
ELNPLRKKLKKRFPKATRNSIGRDIPKMLELFKTAHEIMVDEERQNFLSTKIATVSYSCIPCADAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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