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Report for CCDS51578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51578.1 Public Mus musculus 5 Mepe 23 108 98 CCDS HistoryNCBI Gene:94111Re-query CCDS DB by CCDS ID:51578.1Re-query CCDS DB by GeneID:94111See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51578.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066207.3 ENSMUSP00000065200.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066207.3Link to Ensembl Protein Viewer:ENSMUSP00000065200.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066207Re-query CCDS DB by Protein ID:ENSMUSP00000065200
Original member Current member NCBI NM_053172.2 NP_444402.2 Accepted alive Link to Nucleotide Sequence:NM_053172.2Link to Protein Sequence:NP_444402.2Re-query CCDS DB by Nucleotide ID:NM_053172Re-query CCDS DB by Protein ID:NP_444402Link to BLAST:NP_444402.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444402.2 441 Q8K4L6 441 100% 0 0

Chromosomal Locations for CCDS 51578.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 104325395 104325404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104327065 104327132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104337074 104338321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGACGCCAGAGGGCCTCATGAAGATGCAGGCTGTGTCTGTTGGACTGCTCCTCTTCAGTATGACCTGGG
CGGCACCAATGCCGAATGAAGACAGGAGCAGCTGCGGCAATCAAGACAGCATTCACAAGGACTTGGCAGC
ATCTGTGTATCCTGATCCCACGGTGGATGAAGGCACAGAGGATGGGCAAGGTGCTCTCCTTCACCCGCCT
GGCCAGGACAGGTATGGTGCTGCCCTCCTCAGAAATATCACGCAGCCTGTAAAGAGTCTAGTGACTGGGG
CCGAACTACGGAGGGAAGGAAACCAGGAGAAGAGACCTCAGAGTGTTCTAAGCGTAATTCCAGCAGATGT
CAATGATGCTAAAGTCTCCTTAAAAGACATAAAGAATCAAGAGAGTTATCTGCTAACCCAGAGCAGCCCG
GTCAAAAGCAAACACACCAAACACACCCGCCAGACCCGACGGAGCACTCACTACCTGACACATCTCCCAC
AGATCAAGAAGACTCCCAGTGACCTTGAAGGCAGTGGCTCCCCAGATCTTCTAGTGAGGGGAGATAATGA
TGTCCCCCCTTTCAGTGGAGATGGGCAACATTTTATGCACATTCCTGGCAAAGGAGGTGCTGGGTCTGGT
CCTGAAAGCTCAACTAGTCGCCCCCTCTCAGGCTCCAGCAAAGCTGAAGTTATTGACCCACATATGAGTG
GACTAGGCTCTAATGAGATCCCGGGGAGAGAAGGACATGGTGGCAGTGCCTATGCAACCAGAGACAAAGC
TGCACAGGGGGCAGGCTCTGCAGGTGGGAGCCTTGTGGGGGGCAGCAATGAAATCACAGGCAGCACCAAT
TTCAGGGAACTCCCCGGAAAAGAAGGAAACAGAATTAATGCCGGCAGCCAAAATGCTCATCAAGGGAAAG
TAGAATTTCACTATCCACAAGTGGCCTCGAGAGAAAAGGTAAAGGGGGGCGTGGAGCATGCAGGGAGAGC
TGGTTACAACGAAATCCCCAAGAGCAGCAAAGGTAGCTCTAGCAAAGATGCAGAAGAGTCCAAAGGGAAC
CAATTAACCTTGACTGCAAGCCAAAGATTTCCAGGTAAAGGCAAAAGCCAGGGCCCTGCTCTGCCCTCTC
ACAGTCTTAGTAATGAGGTTAAAAGTGAAGAAAACCATTATGTGTTCCATGGACAAAATAATCTTACACC
GAATAAAGGGATGTCACAGCGGAGAGGCTCCTGGCCTTCGAGAAGACCCAATTCCCACAGGCGCGCTAGC
ACCCGCCAAAGAGACAGCAGCGAGTCGTCATCCAGTGGGAGTTCTAGTGAGAGTCATGGTGACTAG

Translation (441 aa):
MTPEGLMKMQAVSVGLLLFSMTWAAPMPNEDRSSCGNQDSIHKDLAASVYPDPTVDEGTEDGQGALLHPP
GQDRYGAALLRNITQPVKSLVTGAELRREGNQEKRPQSVLSVIPADVNDAKVSLKDIKNQESYLLTQSSP
VKSKHTKHTRQTRRSTHYLTHLPQIKKTPSDLEGSGSPDLLVRGDNDVPPFSGDGQHFMHIPGKGGAGSG
PESSTSRPLSGSSKAEVIDPHMSGLGSNEIPGREGHGGSAYATRDKAAQGAGSAGGSLVGGSNEITGSTN
FRELPGKEGNRINAGSQNAHQGKVEFHYPQVASREKVKGGVEHAGRAGYNEIPKSSKGSSSKDAEESKGN
QLTLTASQRFPGKGKSQGPALPSHSLSNEVKSEENHYVFHGQNNLTPNKGMSQRRGSWPSRRPNSHRRAS
TRQRDSSESSSSGSSSESHGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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