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Report for CCDS51685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51685.1 Public Mus musculus 5 Tmem184a 23 108 98 CCDS HistoryNCBI Gene:231832Re-query CCDS DB by CCDS ID:51685.1Re-query CCDS DB by GeneID:231832See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51685.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044002.9 ENSMUSP00000035399.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044002.9Link to Ensembl Protein Viewer:ENSMUSP00000035399.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044002Re-query CCDS DB by Protein ID:ENSMUSP00000035399
Original member Current member NCBI NM_001161548.1 NP_001155020.1 Accepted alive Link to Nucleotide Sequence:NM_001161548.1Link to Protein Sequence:NP_001155020.1Re-query CCDS DB by Nucleotide ID:NM_001161548Re-query CCDS DB by Protein ID:NP_001155020Link to BLAST:NP_001155020.1

Chromosomal Locations for CCDS 51685.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139805482 139805741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139806182 139806376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139806905 139807074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139807620 139807711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139807794 139807869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139807957 139808047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139808357 139808522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139812965 139813192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139814053 139814124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGACCAGCCAGGCTGCCCCAGAGGAGGCTAGGCCTCCAAGGCCCGGTCCAAAGAGCTTCCTGCTCACAG
AGATGAGGAATGCGTCAGGGTTTCTGAAGACAGCCGGAGCCCCCCTCGTGTCAGCGACCTGGCTTCCACC
CAGCCCCCCTCCGGCAATGCCCACAGTGGCAGCCGGGCCACAGATGGAGCGCGTGGACAACGGCTCGCAG
GGGGCCCCCCAGCTCTTCCTCACCAGCGCATTGGCCCGAGGCGTTTCAGGCGTGTTTGTATGGACTGCTC
TGCTGCTAACCGGCCACCAGATCTACTCCCACCTACGTTCCTATACCGCCCCGCGAGAGCAGCGCTTCGT
CATCCGCCTCCTGTTCATTGTGCCCATCTACGCCTTCGACTCCTGGCTCAGCCTCCTCCTCCTTGGGGGC
CATCCTTACTACGTCTACTTCGACTCTGTGCGAGACTGCTACGAAGCATTTGTCATCTACAGTTTCCTGA
CCTTGTGCTTCCAATATCTGGGGGGCGAGAGCGCCATCATGGCTGAGATCCGAGGCAAACCTATCAGGTC
CAGCTGCTTCTATGGGACCTGCTGCCTCCGTGGTATGTCCTACTCCATCACGTTCTTACGCTTCTGCAAA
CAGGCCACACTCCAGTTCTGCATTGTGAAACCCGTTATGGCGCTGATCACCATCATCCTCCAGGCTTTTG
ACAAATACCACGATGGGGACTTCAACATCCACAGCGGCTACCTGTACGTGACCCTCGTGTACAATGCCTC
GGTCAGCCTGGCTCTCTACGCTCTGTTCCTTTTCTACTTCGCTACCAGGGACCTCCTGAGACCCTTCGAG
CCGGTACTCAAGTTCCTCACCATCAAAGCCATCATCTTCCTCTCCTTCTGGCAGGGAATGCTGTTGGCCA
TCTTGGAGAGGTGTGGGGTCATCCCTGAGGTCCAGGCCGTGGACGGCACCAGGGTTGGGGCTGGTACCCT
AGCCGCTGGCTACCAGAATTTCCTCATCTGTGTTGAGATGCTGTTCGCCTCCCTCGCGCTGCGTTACGCC
TTCCCCAGCCAGGTGTATTCAGAGAAGAAGAACTCACCAGTCCCGCCAGCACCTATGCAAAGCATATCCA
GTGGCTTAAAGGAGACCATCAGCCCACAGGACATTGTCCAGGACGCCATTCATAACTTCTCGCCAGCCTA
CCAGCAGTACACACAGCAGTCCACACATGAAGCTCCTGGGCCTGGCCAGGGTGGGCACCCAGCACCCAGT
ACCCACCCCGGCCCAGCCAGTGGCTCTGGAGGTGGTAAGAAGAGTCGCAACATAGAGAAACGCATGCTGA
TTCCCTCAGAGGACCTGTAG

Translation (449 aa):
MTSQAAPEEARPPRPGPKSFLLTEMRNASGFLKTAGAPLVSATWLPPSPPPAMPTVAAGPQMERVDNGSQ
GAPQLFLTSALARGVSGVFVWTALLLTGHQIYSHLRSYTAPREQRFVIRLLFIVPIYAFDSWLSLLLLGG
HPYYVYFDSVRDCYEAFVIYSFLTLCFQYLGGESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCK
QATLQFCIVKPVMALITIILQAFDKYHDGDFNIHSGYLYVTLVYNASVSLALYALFLFYFATRDLLRPFE
PVLKFLTIKAIIFLSFWQGMLLAILERCGVIPEVQAVDGTRVGAGTLAAGYQNFLICVEMLFASLALRYA
FPSQVYSEKKNSPVPPAPMQSISSGLKETISPQDIVQDAIHNFSPAYQQYTQQSTHEAPGPGQGGHPAPS
THPGPASGSGGGKKSRNIEKRMLIPSEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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