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Report for CCDS51752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51752.1 Public Mus musculus 6 Hipk2 23 108 98 CCDS HistoryNCBI Gene:15258Re-query CCDS DB by CCDS ID:51752.1Re-query CCDS DB by GeneID:15258See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160962.7 ENSMUSP00000125572.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160962.7Link to Ensembl Protein Viewer:ENSMUSP00000125572.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160962Re-query CCDS DB by Protein ID:ENSMUSP00000125572
Original member NCBI NM_001136065.2 NP_001129537.1 Updated not alive Link to Nucleotide Sequence:NM_001136065.2Link to Protein Sequence:NP_001129537.1Re-query CCDS DB by Nucleotide ID:NM_001136065Re-query CCDS DB by Protein ID:NP_001129537
Current member NCBI NM_001136065.3 NP_001129537.1 Accepted alive Link to Nucleotide Sequence:NM_001136065.3Link to Protein Sequence:NP_001129537.1Re-query CCDS DB by Nucleotide ID:NM_001136065Re-query CCDS DB by Protein ID:NP_001129537Link to BLAST:NP_001129537.1

Chromosomal Locations for CCDS 51752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 38698135 38698596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38699252 38699415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38703439 38703686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38715940 38716221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38718754 38718933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38721455 38721594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38729921 38730042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38730869 38730995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38737358 38737520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38743076 38743260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38745664 38745750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38747447 38747566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38747874 38747997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38818230 38819311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3486 nt):
ATGGCCTCACATGTGCAAGTTTTCTCCCCTCACACCCTTCAATCAAGTGCCTTCTGTAGTGTGAAGAAAC
TAAAAGTAGAGCCAAGTTCCAACTGGGACATGACTGGGTACGGCTCCCACAGCAAAGTGTACAGCCAGAG
CAAGAACATACCACCTTCTCAGCCAGCCTCCACAACCGTCAGCACCTCCTTGCCAATCCCCAACCCAAGC
CTACCTTACGAGCAGACCATCATCTTCCCAGGAAGTACTGGACACATAGTTGTAACATCAGCAAGTAGCA
CTTCTGTCACCGGGCAAGTCCTCGGTGGACCACATAACCTAATGCGTCGAAGCACTGTGAGCCTCCTTGA
CACCTACCAAAAATGTGGACTCAAGCGCAAGAGTGAGGAGATTGAGAACACAAGCAGCGTGCAGATCATT
GAAGAGCATCCACCCATGATTCAGAATAATGCCAGCGGGGCCACTGTAGCCACTGCCACCACATCCACTG
CCACCTCCAAAAACAGTGGCTCCAACAGTGAAGGGGACTATCAGCTGGTGCAGCATGAAGTACTGTGCTC
CATGACCAACACCTATGAGGTTTTAGAGTTCTTGGGGCGAGGGACATTTGGGCAAGTGGTCAAGTGCTGG
AAACGGGGCACCAATGAAATTGTGGCCATTAAGATCCTCAAGAACCACCCCTCCTATGCCCGGCAAGGCC
AGATTGAAGTGAGCATCTTGGCCCGGCTGAGCACGGAGAGCGCTGATGACTACAATTTTGTGCGGGCCTA
TGAGTGCTTCCAGCACAAGAACCACACGTGCTTAGTCTTTGAGATGTTGGAGCAGAACCTTTATGACTTT
CTGAAACAGAACAAGTTTAGTCCCTTGCCCCTCAAGTATATTCGCCCAGTCCTCCAGCAGGTAGCCACAG
CCCTGATGAAACTCAAAAGCCTGGGTCTTATCCATGCTGACCTCAAACCAGAAAACATCATGCTGGTGGA
TCCATCCAGACAACCGTACCGAGTGAAGGTCATTGACTTTGGTTCAGCTAGTCATGTGTCCAAAGCTGTC
TGCTCTACGTACTTGCAATCCAGATACTACCGGGCCCCTGAGATCATCCTTGGTTTGCCATTCTGTGAGG
CAATTGACATGTGGTCCCTTGGTTGTGTCATTGCTGAACTGTTCCTGGGCTGGCCATTATACCCAGGTGC
TTCTGAGTATGATCAGATTCGGTATATTTCACAAACACAGGGTTTACCAGCTGAATATTTATTAAGTGCA
GGGACAAAGACAACTAGGTTTTTCAACCGTGACACAGACTCACCGTATCCTTTGTGGAGGCTAAAGACAC
CAGATGACCATGAAGCAGAGACGGGAATTAAGTCAAAGGAAGCAAGAAAGTACATTTTCAACTGTTTGGA
TGATATGGCCCAGGTGAACATGACAACAGATTTGGAAGGGAGTGACATGTTAGTAGAGAAGGCAGACCGA
CGGGAGTTCATTGACCTGTTAAAGAAGATGCTGACCATCGATGCTGATAAGAGAGTCACTCCCATTGAAA
CTCTGAACCACCCCTTTGTCACCATGACACACCTGCTTGACTTCCCCCATAGTGCCCATGTCAAATCTTG
TTTCCAAAACATGGAGATTTGCAAGCGCCGGGTGAATATGTATGACACAGTGAACCAGAGCAAAACACCT
TTCATCACTCACGTGGCCCCCAGCACATCCACCAACTTGACCATGACCTTTAACAACCAGCTGACCACTG
TCCACAACCAGCCCTCAGCGGCATCCATGGCCGCGGTGGCCCCGCGGAGCATGCCCCTGCAGACGGGAAC
AGCCCAAATTTGTGCCCGACCTGATCCCTTCCAGCAAGCTCTCATCGTGTGTCCCCCTGGCTTCCAAGGC
CTGCAGGCCTCTCCCTCCAAGCACGCTGGCTACTCAGTGCGGATGGAAAATGCTGTCCCCATCGTCACCC
AGGCGCCAGGAGCTCAGCCTCTTCAGATCCAACCAGGCCTGCTTGCTCAGGCCTGGCCAGGTGGGGCCCA
ACAGATCCTACTTCCTCCAGCATGGCAGCAGCTGACTGGCGTGGCCACCCACACATCTGTACAGCATGCA
GCTGTGATTCCTGAGACCATGGCAGGCACTCAGCAACTGGCTGACTGGAGGAACACGCATGCTCATGGAA
GTCATTACAATCCCATCATGCAGCAGCCTGCACTCTTGACTGGTCATGTGACCCTTCCAGCTGCCCAGCC
CTTAAATGTGGGTGTAGCCCATGTGATGAGGCAACAACCAACCAGCACCACCTCCTCCAGGAAGAGTAAG
CAGCACCAGTCATCTGTGAGAAATGTCTCCACCTGTGAGGTGACCTCTTCACAGGCTATCAGCTCCCCTC
AGCGATCCAAGCGTGTCAAGGAGAACACTCCCCCACGGTGCGCCATGGTACACAGCAGCCCAGCTTGCAG
CACCTCAGTCACCTGTGGGTGGGGCGACGTGGCCTCCAGCACCACCCGGGAGCGACAGCGGCAGACGATT
GTCATCCCCGACACCCCGAGCCCCACAGTCAGTGTCATCACCATCAGCAGTGACACCGATGAAGAAGAGG
AGCAGAAGCACGCCCCCACCAGCACAGTCTCCAAGCAAAGAAAAAATGTCATCAGCTGTGTCACCGTCCA
CGACTCTCCCTACTCTGACTCCTCCAGCAACACCAGCCCCTACTCGGTGCAGCAGCGCACAGGGCACAAC
GGCACCAACACCTTGGACACCAAGGGGGGCCTAGAGAATCACTGCACTGGCAACCCCCGCACCATCATCG
TACCCCCACTGAAGACCCAGGCCAGTGAAGTGTTGGTAGAATGTGACAGCCTAGGGCCAGCGATCAGTGC
CAGTCACCATTCGTCCTCCTTCAAGTCCAAGTCCTCCAGCACCGTGACCTCCACCAGTGGACACTCTTCA
GGGAGCTCTTCAGGAGCCATCGCCTACCGTCAGCAGCGGCCAGGCCCCCACTTCCAGCAGCAGCAGCCCC
TCAATCTCAGCCAGGCCCAGCAGCACATGGCTGCGGACCGCACCGGGAGTCACCGTCGACAGCAGGCCTA
CATCACTCCGACCATGGCGCAAGCTCCGTACACCTTCCCGCACAACAGCCCCAGCCATGGCACTGTTCAC
CCCCACCTGGCTGCGGCTGCCCACCTCCCCACCCAGCCTCACCTCTACACCTATACAGCGCCCACAGCCC
TAGGCTCCACCGGCACTGTAGCCCACCTGGTGGCATCCCAAGGCTCAGCACGCCACACCGTGCAGCACAC
TGCCTATCCGGCCAGCATCGTCCACCAGGTCCCTGTGAGCATGGGGCCCCGGGTCCTGCCCTCGCCCACC
ATCCACCCCAGTCAGTATCCAGCCCAGTTTGCCCACCAGACCTATATCAGCGCCTCGCCAGCCTCCACCG
TCTACACTGGATACCCACTGAGTCCTGCCAAGGTCAACCAATACCCTTACATATAA

Translation (1161 aa):
MASHVQVFSPHTLQSSAFCSVKKLKVEPSSNWDMTGYGSHSKVYSQSKNIPPSQPASTTVSTSLPIPNPS
LPYEQTIIFPGSTGHIVVTSASSTSVTGQVLGGPHNLMRRSTVSLLDTYQKCGLKRKSEEIENTSSVQII
EEHPPMIQNNASGATVATATTSTATSKNSGSNSEGDYQLVQHEVLCSMTNTYEVLEFLGRGTFGQVVKCW
KRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTESADDYNFVRAYECFQHKNHTCLVFEMLEQNLYDF
LKQNKFSPLPLKYIRPVLQQVATALMKLKSLGLIHADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAV
CSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLPAEYLLSA
GTKTTRFFNRDTDSPYPLWRLKTPDDHEAETGIKSKEARKYIFNCLDDMAQVNMTTDLEGSDMLVEKADR
REFIDLLKKMLTIDADKRVTPIETLNHPFVTMTHLLDFPHSAHVKSCFQNMEICKRRVNMYDTVNQSKTP
FITHVAPSTSTNLTMTFNNQLTTVHNQPSAASMAAVAPRSMPLQTGTAQICARPDPFQQALIVCPPGFQG
LQASPSKHAGYSVRMENAVPIVTQAPGAQPLQIQPGLLAQAWPGGAQQILLPPAWQQLTGVATHTSVQHA
AVIPETMAGTQQLADWRNTHAHGSHYNPIMQQPALLTGHVTLPAAQPLNVGVAHVMRQQPTSTTSSRKSK
QHQSSVRNVSTCEVTSSQAISSPQRSKRVKENTPPRCAMVHSSPACSTSVTCGWGDVASSTTRERQRQTI
VIPDTPSPTVSVITISSDTDEEEEQKHAPTSTVSKQRKNVISCVTVHDSPYSDSSSNTSPYSVQQRTGHN
GTNTLDTKGGLENHCTGNPRTIIVPPLKTQASEVLVECDSLGPAISASHHSSSFKSKSSSTVTSTSGHSS
GSSSGAIAYRQQRPGPHFQQQQPLNLSQAQQHMAADRTGSHRRQQAYITPTMAQAPYTFPHNSPSHGTVH
PHLAAAAHLPTQPHLYTYTAPTALGSTGTVAHLVASQGSARHTVQHTAYPASIVHQVPVSMGPRVLPSPT
IHPSQYPAQFAHQTYISASPASTVYTGYPLSPAKVNQYPYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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