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Report for CCDS51890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51890.1 Public Mus musculus 6 Cecr2 23 108 98 CCDS HistoryNCBI Gene:330409Re-query CCDS DB by CCDS ID:51890.1Re-query CCDS DB by GeneID:330409See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 51890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112686.7 ENSMUSP00000108306.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112686.7Link to Ensembl Protein Viewer:ENSMUSP00000108306.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112686Re-query CCDS DB by Protein ID:ENSMUSP00000108306
Original member Current member NCBI NM_001128151.2 NP_001121623.1 Accepted alive Link to Nucleotide Sequence:NM_001128151.2Link to Protein Sequence:NP_001121623.1Re-query CCDS DB by Nucleotide ID:NM_001128151Re-query CCDS DB by Protein ID:NP_001121623Link to BLAST:NP_001121623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121623.1 1425 E9Q2Z1-2 1425 100% 0 0

Chromosomal Locations for CCDS 51890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 120666582 120666707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120720868 120720962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120731260 120731443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120733731 120733870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120734558 120734662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120737099 120737148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120738156 120738325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120743783 120743866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120750852 120751005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120752640 120752769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120754525 120754562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120754649 120754740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120755517 120755643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120756549 120756853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120757566 120757691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120757815 120758631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120761141 120762557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120765272 120765383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120766412 120766417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4278 nt):
ATGTGCCCGGAGGAAGGCGGCGCGGCCGGGCTGGGCGAGCTCCGCTCCTGGTGGGAAGTCCCGGCCATCG
CGCACTTCTGCTCGCTCTTTCGCACGGCGTTCCGCCTGCCCGACTTCGAGATCGAGGAGTTAGAGGCAGC
TCTTCACAGAGATGACGTGGAGTTTATCAGTGATCTGATTGCCTGCTTGCTTCAAGGCTGCTATCAGCGA
AGAGATATCACGCCTCAGACATTCCACAGCTACTTGGAAGATATCATTAACTACCGTTGGGAGCTTGAAG
AAGGAAAGCCCAATCCTCTGAGAGAAGCTAGTTTCCAAGACCTTCCTCTGCGTACTCGAGTAGAGATCCT
GCATCGCCTCTGTGATTACCGGCTTGATGCAGATGATGTCTTTGATCTTCTCAAGGGTCTGGATGCAGAC
AGTCTCAGAGTTGAACCTCTGGGTGAAGACAATTCAGGTGCACTCTACTGGTACTTCTATGGGACACGAA
TGTACAAAGAAGACCCAGTACAAGGAAGGTCCAATGGAGAACTCTCCTTGTGCAGGGAAAGTGAAAGGCA
AAAAAATGTCTCAAATGTTCCTGGAAAAACAGGCAAAAGAAGAGGAAGGCCTCCAAAGCGAAAAAAGCTA
CAGGAGGAGATTATATCCAGTGAAAAGCAGGAAGAAAACTCCTTGACATCTGACCTACAGACAAGAAATG
GATCCCGAGGGCCAGGCCAAGGTACTTGGTGGCTCCTGTGTCAAACAGAAGAAGAATGGAGACAGGTCAC
TGAGAGCTTCCGAGAGCGGACCTCTCTCCGAGAGCGGCAACTCTACAAGCTCCTTAGCGAGGACTTCCTG
CCTGAAATTTGCAACATGATTGCCCAGAAGGGAAAACGTCCACAGCGCACAAAGCCAGAGTTGCAACATA
GGTTTATGTCTGACCACCTGTCCATCAAATCCATCAAGCTAGAGGAAACTCCCATGCTCACCAAGATAGA
AAAACAGAAGCGCAGGGAGGAGGAGGAGGAGCGACAGCTCCTTCTTGCCGTGCAGAAGAAGGAGCAAGAG
CAGATGTTAAAGGAGGAGAGAAAGCGGGAAATGGAGGAAAAGGTCAAGGCAGTGGAAGATCGAGCTAAGA
GGAGAAAGCTCAGGGAAGAACGAGCATGGCTATTGGCTCAAGGCAAGGAGCTACCCCCAGAACTTTCCCA
TTTGGACCTGAATTCTCCTATGAGGGAAGGGAAGAAGACCAAGGACCTCTTTGAATTGGATGACGATTTC
ACAGCCATGTATAAAGTTCTAGATGTGGTGAAGGCTCACAAGGATTCCTGGCCCTTCTTGGAACCTGTGG
ATGAATCGTATGCCCCCAACTATTACCAGATTATTAAGATCCCCATGGATATTTCAAGCATGGAGAAGAA
ATTAAACGGAGGTTTATATTGTAACAAGGAGGAATTTGTAAATGACATGAAGACCATGTTCAGAAATTGC
CGAAAATACAATGGTGACAGTAGTGAGTATACCAAGATGTCTGACAATTTAGAGCGGTGTTTCCATCGGG
CCATGACAAAACATTTTCCTGGTGAAGATGGAGACACAGATGAAGAATTTTGGATCAAAGAGGATGAAAA
ACGGGAAAAAAGAAGAAGTCGGTCTGGTAGAAGTAGTGGAAGCCATGTTTGGACGCGCTCCAGAGACACA
GAAGGGTCGAGCAGGAAACAGCCACCAGTGGAGAATGGGGGAAAATCATTGCCCCCGGCACGCCGAGCTG
CCTCCTCAGGGGACGATCAGAGTAGGAGTTCCATACAACTCCCTCCAGAGAGGCCAGCAGCACCAGGAAC
ATTTGGCTCTCTTCAAGGATCAGATCCCACCAACTTACATGGCTCCTCTAGAATCCCAGAGGCTCCCCCA
GGAGAGCCCTTGCAACACCCACCCTTTGCTATACAGGCTCCAGTTGGAATTAGTAACCATCGGGGATCCC
TGCTCAGTGCTCCAGACCTTTCCAATATGGGGTCACATGTCCCATCCTTACAGCTTGGGCAGATGAATTG
TCCCAGTCAAGATGGAAACATGTATCCACCAGCTCCATTCCAGGCAGGATTTATTCCTTCTAGGCATGGT
GGGACTCCAGCCCGACCCCCAGACTTTCCTGAAAGCTCTGAAATTCCTCCCGGTCATATTTATCATTCAT
ACAAGTATCTAAATCGAGCACACCCTGCTGTTTGGAATGGGAACCATGGTACTACAAACCCTGGACGTTT
GGGGCCAGATGAGAAGCCCCACCTGGGGCCAGGACCCTCTCACCACCCTCATACCCTTGGTCATATGATG
GATGGCCGAGTGATGAGACAACCTATCCCACCAAACCAGTGGACTAAACAGTCAAGCTTTCTACCTCATG
GAGTTCCTTCCTCGGGGTATATGCAGCCACCCTGTAAGTCTGCTGGACATCGTTTGCAGCCACCTCCAAC
TCCAGCACCAAGTCCTCGATTCAGAGGGCCCTCCCAGGCCCTCCGGGGGGCACAAGGAGGGGAATCCATG
ATGGACAGCCCTGAAATGATTGCCATGCAGCAGCTCTCCTCCCGAGTCTGTCCCCCAGGTGTGCCTTACC
ACCCCCGCCAGCCCACTCCTCCCCAGTTACCTGGTCCCTTTCCGCAGGTAGCTCATTCAGCTTCAGTCTG
TGTGTCGGCGCCCAAGCCTGCATTGGACAACCCTGGGAGTACACAGGAGATGACTGAAACACACGAGCCC
GAGGAAGACCCAGCAGAGCCTTTGCCTGGACATGAAGAGAAAGCAGCAAGCATTTGTTCTTCAGAGGGGG
TATACCTCAAACAGCTACCTCACCCAGCACCTCCCTTGCAAGCCAGCTGTACCAGGCAAAGCTCACCACA
AGAAAGGGAAACAGAGGACTCCCAACTCAAAAGTGATGCTTCAGACTCTGCAGACACTTATAAGACATCA
AAGAACAAGAACACCTGGCCTTTGGACAATAGCTACAGCAGCCCAGCTGTGCAAGGCTGTTTGAGGGACC
TCTCCATAGTGGCAGAGACGGGGAATCTACCTGAAAATGGGGTCGTTGGTGAAGCATCTCCCTGTAGGTC
AGAGGGGAAGGGCCTTGATGGTAGTGGTTCAGAAAAGCCACTCTGCCCCAGGGGTAAAACATTGCAAGAA
GCCGTGCCATGTACAGGACCGAATGCAACTACACCTCCTTGCACAGATCCCAGTTTGATGGCAGCCACTG
TGAACCAGTTTTCTCCCTTATACATGCCTGGCATAGAATACTCTAACTCAGCTACACAGTACCCTATGAG
TCCAAGTTTGCAAGGTTTGGCCTCTATGATGGGAGGAAAGTCCTCAGGATCACAACCTCAGTCCTTTCCT
CCCAGGGGTTTCCAGGCTAATGGTCCCCACCCTGGACTCTTTCCTCGGTACCGTCCTCAGCAGGGAATGA
GATATTCCTACCAGCCGCCTTCTCAGCCTTCCTACCACCCCTATCAGCGGACTCCTTATTATACATGTCC
ACAGGGCTTTTCTGATTGGCAGAGATCTCTCCCTTCCCAGAGAAGCCCAAGTGGACCCCCAGGAAGTCAC
CCTCCACGCTCCCTCTTTTCAGAGAAGAATGTCCTGTCTAGTCTGCAAGGTTGTGAAACATTAAATACTG
CCTTAACTTCTCCAACTCAAATGGATGTAGTGACTGCTAAAGTTGTTCCTCCTGATGGACACAATTCTGG
TCCAGAAGAAGAAAAGATGGATGAATCTGTGGAGAGGCCAGAGAGTCCCAAAGAATTTCTAGATCTCGAC
AACCATAATGCAGCTACCAAGCGGCAGAACTCACTGTCAACCAGTGACTATCTTTATGGAACTCCACCAC
CATCTCTGAGTTCAGGAATGACTTTTGGTTCATCTGCTTTCCCACCCCACAGTGTGATGCTGCAGACAGG
GTCTCCATACACTCCTCAGCGATCAGCCAGTCATTTTCAGCCCAGGGCATACCCATCCCCTGTGCCTGCC
CATCCACCTCCCCATCCAGTAGCCACCCAACCCAATGGCCTCTCTCCAGAGGATTCCCTCTACTGCTGTC
AGGAAGAGGGCCTAGGTCACTTTCAGGCTTCGATGATGGAGCAGACTGGTACCGGAAGCGGATTAAGAGG
CTCATTTCAAGAAGTACACAGACCACCAGGATTGCAGATGCATCCAGTGCAGTCACAGTCCTTATTCCCA
AAGACCCCGGCACCTGCAGCATCACCAGAACAGTTGCCACCGCATAAGACCCCAACGCTTCCTCTGGATC
AGAGCTAG

Translation (1425 aa):
MCPEEGGAAGLGELRSWWEVPAIAHFCSLFRTAFRLPDFEIEELEAALHRDDVEFISDLIACLLQGCYQR
RDITPQTFHSYLEDIINYRWELEEGKPNPLREASFQDLPLRTRVEILHRLCDYRLDADDVFDLLKGLDAD
SLRVEPLGEDNSGALYWYFYGTRMYKEDPVQGRSNGELSLCRESERQKNVSNVPGKTGKRRGRPPKRKKL
QEEIISSEKQEENSLTSDLQTRNGSRGPGQGTWWLLCQTEEEWRQVTESFRERTSLRERQLYKLLSEDFL
PEICNMIAQKGKRPQRTKPELQHRFMSDHLSIKSIKLEETPMLTKIEKQKRREEEEERQLLLAVQKKEQE
QMLKEERKREMEEKVKAVEDRAKRRKLREERAWLLAQGKELPPELSHLDLNSPMREGKKTKDLFELDDDF
TAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKIPMDISSMEKKLNGGLYCNKEEFVNDMKTMFRNC
RKYNGDSSEYTKMSDNLERCFHRAMTKHFPGEDGDTDEEFWIKEDEKREKRRSRSGRSSGSHVWTRSRDT
EGSSRKQPPVENGGKSLPPARRAASSGDDQSRSSIQLPPERPAAPGTFGSLQGSDPTNLHGSSRIPEAPP
GEPLQHPPFAIQAPVGISNHRGSLLSAPDLSNMGSHVPSLQLGQMNCPSQDGNMYPPAPFQAGFIPSRHG
GTPARPPDFPESSEIPPGHIYHSYKYLNRAHPAVWNGNHGTTNPGRLGPDEKPHLGPGPSHHPHTLGHMM
DGRVMRQPIPPNQWTKQSSFLPHGVPSSGYMQPPCKSAGHRLQPPPTPAPSPRFRGPSQALRGAQGGESM
MDSPEMIAMQQLSSRVCPPGVPYHPRQPTPPQLPGPFPQVAHSASVCVSAPKPALDNPGSTQEMTETHEP
EEDPAEPLPGHEEKAASICSSEGVYLKQLPHPAPPLQASCTRQSSPQERETEDSQLKSDASDSADTYKTS
KNKNTWPLDNSYSSPAVQGCLRDLSIVAETGNLPENGVVGEASPCRSEGKGLDGSGSEKPLCPRGKTLQE
AVPCTGPNATTPPCTDPSLMAATVNQFSPLYMPGIEYSNSATQYPMSPSLQGLASMMGGKSSGSQPQSFP
PRGFQANGPHPGLFPRYRPQQGMRYSYQPPSQPSYHPYQRTPYYTCPQGFSDWQRSLPSQRSPSGPPGSH
PPRSLFSEKNVLSSLQGCETLNTALTSPTQMDVVTAKVVPPDGHNSGPEEEKMDESVERPESPKEFLDLD
NHNAATKRQNSLSTSDYLYGTPPPSLSSGMTFGSSAFPPHSVMLQTGSPYTPQRSASHFQPRAYPSPVPA
HPPPHPVATQPNGLSPEDSLYCCQEEGLGHFQASMMEQTGTGSGLRGSFQEVHRPPGLQMHPVQSQSLFP
KTPAPAASPEQLPPHKTPTLPLDQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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