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Report for CCDS51959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51959.1 Public Mus musculus 6 Mrps35 23 108 98 CCDS HistoryNCBI Gene:232536Re-query CCDS DB by CCDS ID:51959.1Re-query CCDS DB by GeneID:232536See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51959.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036111.9 ENSMUSP00000048348.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036111.9Link to Ensembl Protein Viewer:ENSMUSP00000048348.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036111Re-query CCDS DB by Protein ID:ENSMUSP00000048348
Original member NCBI NM_145573.2 NP_663548.2 Updated not alive Link to Nucleotide Sequence:NM_145573.2Link to Protein Sequence:NP_663548.2Re-query CCDS DB by Nucleotide ID:NM_145573Re-query CCDS DB by Protein ID:NP_663548
Current member NCBI NM_145573.3 NP_663548.2 Accepted alive Link to Nucleotide Sequence:NM_145573.3Link to Protein Sequence:NP_663548.2Re-query CCDS DB by Nucleotide ID:NM_145573Re-query CCDS DB by Protein ID:NP_663548Link to BLAST:NP_663548.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663548.2 320 Q8BJZ4 320 98.75% 0 4

Chromosomal Locations for CCDS 51959.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 147042795 147042900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147046111 147046148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147048134 147048301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147049828 147049888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147055852 147055991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147060142 147060251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147061423 147061492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147070554 147070823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGCGGCCGCCGCGCTGCAGCTGAGGCAGACCCTGTGCCCGGGAGCGCGCGTCCTGCGCACCTTCTCCT
CGGTCGCCAGCCCCGCGGCTCCGAGAGCCGGCCCGCGTACGGCATCCAGAAGCGAAAGGCCGATGAGGAG
AAAGGCACTACCTCCTAGGACGGAGAAGATGGATACTGATCAGGACTGGCCCAGTGTTTACCCCACTGCC
GCGCCGTTTAAACCCTCAGCTGTTCCTCTACCTGTTCGAATGGGATACCCAGTAAAGAAGGGTGTGCCCA
TGGCGAAGGAAGGGAATCTAGAGCTTTTAAAGATCCCAAATTTTCTGCATTTGACTCCTGTGGCAATTAA
AAGGCACTGTGCAGCATTGAAAGATTTCTGCACTGAGTGGCCAGCTGCACTCGACAGTGATGAGAAATGT
GAGGAGCATTTTCCAGTTGAGATTGATACAGCGGATTATGTGTCATCGGGACCATCTATTCGAAACCCCA
AAGCCCGAGCCGTAACGTTAAGGGTTAAACTTTCCAGTTTGAATTTAGACAATCATGCCAAGAAAAAACT
CATTAAGCTTGTAGGAGAGCGGTACTGCAAGGCCACCGATGTGCTCACTATCACCACAGACAGATGCCCT
TTGAAGCGGCAGAACTGTGACTATGCAGTGTATCTTCTCACAGTCCTGTACCACGAATCTTGGAAAACTG
AAGACTGGGAAAACAGTAAGACCGAGGAAGACATGGACGAGTATGTGTGGGCAAAGAGCTCCTCGGAGAA
CAGTGTCCTTCAGACCCTGCTGCAGATGAGAGCTGCGGAGAGCAGTGTGGCGCCGAGCAGAGAAGAGCTG
CTGGGGACCAAAGAGGTCGAGGATTATCAGAAGTGTATCGTTCGTCTCAAGAACGAGGGGGAGAACGAGG
CAAGCCTCGCTCAGTACAAGGAGTCTGTGAAGAGACTGTTAAATTTGGCGTGA

Translation (320 aa):
MAAAALQLRQTLCPGARVLRTFSSVASPAAPRAGPRTASRSERPMRRKALPPRTEKMDTDQDWPSVYPTA
APFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKRHCAALKDFCTEWPAALDSDEKC
EEHFPVEIDTADYVSSGPSIRNPKARAVTLRVKLSSLNLDNHAKKKLIKLVGERYCKATDVLTITTDRCP
LKRQNCDYAVYLLTVLYHESWKTEDWENSKTEEDMDEYVWAKSSSENSVLQTLLQMRAAESSVAPSREEL
LGTKEVEDYQKCIVRLKNEGENEASLAQYKESVKRLLNLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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