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Report for CCDS52061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52061.1 Public Mus musculus 7 Clasrp 23 108 98 CCDS HistoryNCBI Gene:53609Re-query CCDS DB by CCDS ID:52061.1Re-query CCDS DB by GeneID:53609See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086041.6 ENSMUSP00000083205.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086041.6Link to Ensembl Protein Viewer:ENSMUSP00000083205.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000086041Re-query CCDS DB by Protein ID:ENSMUSP00000083205
Original member Current member NCBI NM_016680.5 NP_057889.3 Accepted alive Link to Nucleotide Sequence:NM_016680.5Link to Protein Sequence:NP_057889.3Re-query CCDS DB by Nucleotide ID:NM_016680Re-query CCDS DB by Protein ID:NP_057889Link to BLAST:NP_057889.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057889.3 668 Q8CFC7-1 668 100% 0 0

Chromosomal Locations for CCDS 52061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19581116 19581158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19581381 19581405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19582232 19582314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19584155 19584201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19584284 19584342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19584470 19584530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19584784 19584823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19585090 19585347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19586341 19586610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19586712 19586927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19587825 19587866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19588591 19588664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19588746 19588824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19590239 19590335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19591090 19591238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19591993 19592077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19594473 19594552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19594907 19595008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19595459 19595556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19603190 19603288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2007 nt):
ATGTGGCACGAGGCTCGGAAGCATGAGCGGAAACTTCGAGGCATGATGGTGGACTACAAGAAGAGGGCGG
AGCGGCGTCGGGAGTACTATGAGAAGATTAAGAAAGACCCCGCTCAGTTCCTGCAGGTGCATGGCCGAGC
CTGCAAGGTTCACCTGGATTCTGCAGTTGCCCTGGCTGCTGAGAGCCCTGTGAACATGATGCCCTGGCAG
GGGGACACCAACAACATGATTGACCGCTTTGATGTTCGTGCACATCTAGACCACATCCCTGACTACACCC
CCCCACTGCTCACCACCATCTCCCCGGAACAGGAGTCAGACGAGCGGAAATGTAACTACGAGCGGTACAG
AGGCCTGGTGCAGAACGACTTCGCCGGCATCTCTGAGGAACAGTGCTTGTATCAGATCTACATTGATGAG
CTGTACGGAGGCCTGCAGAGACCCAGCGAGGATGAGAAGAAGAAGCTGGCAGAGAAGAAGGCTTCCATCG
GCTACACCTATGAAGATAGTACTGTGGCCGAGGTAGAGAAGGTGGCTGAGAAGCCAGAGGAGGAAGAGTC
ACCAGCAGAGGAGGAGAGCAACTCGGATGAAGATGAGGTCATCCCCGACATCGACGTGGAGGTGGATGTG
GATGAGCTGAACCAGGAGCAGGTGGCTGATCTCAATAAGCAGGCCACAACCTACGGCATGGCTGATGGAG
ACTTTGTCAGGATGCTACGGAAAGATAAGGAGGAGGCAGAGGCCATCAAACATGCCAAAGCCCTGGAGGA
GGAGAAAGCCATGTACTCGGGCCGTCGTTCCCGGCGACAGCGAAGAGAGTTCCGGGAGAAGCGGCTGAGA
GGCCGCAAGATCAGCCCTCCCAGTTATGCCCGCCGAGACAGCCCCACCTATGACCCCTATAAGCGGTCAC
CTTCAGAATCTAGTTCCGAGTCCCGCTCCCGCTCTCGCTCCCCGAGCCCAGGCCGCGAGGAAAAAATCAC
TTTCATCACCAGTTTTGGAGGCAGCGACGAGGAGGCAGCTGCTGCAGCTGCTGCAGCCGCCGCATCCGGG
GCTGCCCCAGGGAAGCCCCCTGCGCCTCCCCAAACGGGTGGCCCCGCTCCAGGCCGTAATGCCAGCACCC
GCCGCCGCTCCTCTTCGTCCTCCGCCTCCAGGACCTCCAGCTCCCGATCCAGTTCGCGCTCCAGTTCGCG
CTCCCGCCGTGGCTATTACCGCTCTGGCCGCCACGCACGCTCCCGCTCCCGCTCCTGGTCCCGCTCACGC
TCCCGTTCCCGGCGCTACTCACGCTCCCGCAGCCGCGGACGGCGGCACTCAGACGGCGGTTCCCGCGACG
GACACCGCTACTCACGCTCCCCTGCCCGGCGCGGCGGGTACGTGCCCCGCCGAAGGAGCAGGAGCCGCTC
CCGTTCAGGTGACCGCTATAAGCGGGGTGCCCGGGGCCCCAGGCACCATAGCAGCAGTCATAGCCGCAGC
AGCTGGTCCCTCAGCCCTTCCCGAAGCCGCAGTGTGACCCGGAGCGGAAGCCGCAGCCAGAGCCGGAGCC
GAAGCCGCAGCCAGAGCCACAGCCAGAGCCAGAGTCACTCACCATCGCCCCCAAGGGAGAAGCTGACCAG
GCCGGCAGCGTCCCCTGCTGTGGGCGAGAAGCTGAAAAAGACCGAGCCTGCCGCTGGTAAAGAGACAGGA
GCTGCCAAACCCAAGCTGACCCCACAGGAGAGGCTGAAGCTTCGGATGCAGAAGGCTCTGAACCGCCAGT
TCAAGGCGGATAAGAAGGCAGCTCAGGAGAAGATGATCCAGCAGGAGCATGAGCGGCAGGAGCGAGAGGA
TGAACTGCGAGCCATGGCCCGAAAGATCCGAATGAAGGAGCGAGAGCGGAGAGAGAAGGAGAGAGAAGAA
TGGGAACGCCAATATAGCCGCCAGAGCCGCTCGCCCTCCCCACGCTACAGTCGAGAGTACAGTTCCTCCC
GAAGGCGCTCAAGGTCCAGGTCCCGAAGCCCCCATTACAGACATTAG

Translation (668 aa):
MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAAESPVNMMPWQ
GDTNNMIDRFDVRAHLDHIPDYTPPLLTTISPEQESDERKCNYERYRGLVQNDFAGISEEQCLYQIYIDE
LYGGLQRPSEDEKKKLAEKKASIGYTYEDSTVAEVEKVAEKPEEEESPAEEESNSDEDEVIPDIDVEVDV
DELNQEQVADLNKQATTYGMADGDFVRMLRKDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREKRLR
GRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPSPGREEKITFITSFGGSDEEAAAAAAAAAASG
AAPGKPPAPPQTGGPAPGRNASTRRRSSSSSASRTSSSRSSSRSSSRSRRGYYRSGRHARSRSRSWSRSR
SRSRRYSRSRSRGRRHSDGGSRDGHRYSRSPARRGGYVPRRRSRSRSRSGDRYKRGARGPRHHSSSHSRS
SWSLSPSRSRSVTRSGSRSQSRSRSRSQSHSQSQSHSPSPPREKLTRPAASPAVGEKLKKTEPAAGKETG
AAKPKLTPQERLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARKIRMKERERREKEREE
WERQYSRQSRSPSPRYSREYSSSRRRSRSRSRSPHYRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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