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Report for CCDS52142.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
52142.1 |
Public |
Mus musculus |
7 |
Arhgef1 |
23 |
108 |
98 |
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Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 52142.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000098683.10 |
ENSMUSP00000096280.4 |
Accepted |
alive |
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NCBI |
NM_001130150.1 |
NP_001123622.1 |
Updated |
not alive |
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NCBI |
NM_001130150.2 |
NP_001123622.1 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001123622.1 |
979 |
Q61210-5 |
979 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 52142.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2940 nt): ATGGGAGAAGTCGCCGGAGGGGCGGCCCCAGGGCCTCCCCGGTCTGGCCTGGTGTCCATCATCATCGGGG CGGAGGATGAGGATTTTGAGAACGAGCTGGAGGCGAACTCAGAAGATCAAAACAGCCAGTTCCAGAGCCT AGAGCAAGTGAAGCGCCGCCCTGCCCACCTCATGGCCCTCCTGCAGCATGTGGCCCTGCAGTTCGAGCCA GGACCACTGCTCTGCTGCCTGCATGCAGACATGCTGAGCTCTCTGGGCCCCAAAGAAGCCAAGAAGGCCT TCCTTGACTTCTATCACAGTTTCCTGGAGAAGACTGCGGTTCTACGGGTGCCGGTCCCTCCCAGTGTCGC TTTTGAACTTGATCGTACTCGACCTGATCTGATCTCTGAGGATGTCCAGAGGCGGTTCATACAAGAGGTG GTGCAGAGCCAGCAGGCAGCCGTGAGCCGTCAGCTAGAGGACTTCCGCTCCAAGCGGCTCATGGGCATGA CGCCCTGGGAGCAGGAACTGAGCCTGCTGGAGCCCTGGATTGGGAAAGACCGAGGCAACTATGAGGCCCG GGAGCGGCATGTTGCGGAGCGGCTGCTGTCCCACCTGGAGGAGACCCAGCATACCATCTCTACAGATGAA GAGAAAAGTGCTGCTGTGGTCACTGCCATCAGCCTGTATATGCGCCACCTTGGAGTCCGGACCAAGAGTG GGGACAAGAAGTCGGGAAGGAACTTCTTCCGGAAAAAGGTGATGGGGAATCGGAGGTCAGACGAACCCCC AAAGACAAAGAAAGGGCTGAGCAGTATCCTAGATCCTGCACGTTGGAACCGGGGAGAGCCATCCGCTCCA GATTGTCGACATCTAAAGGTCGAGGCTGATGAGAAGCCAGGCCCTGCAGACCGGAAGGGAGGCCTGGGTA TGTCTTCTCGGGACAGGACTGTTGGGACTCCTGGACAGGACAACCCAGGAGTCTCCCTGCACCCTCTGTC TACAGACAGCGTCGACTCCCGGGAACCAGGCGTGGATACCCCGCAGGAGCCAGGGGATACACCCCCACAG GGCCCTACCAGCCTGGAGCCCCTGGCGCCCCCAGAGAGCACAGAGGACAATGGCGAGACTGAGAGAAGGT GGAAGAGGCTATCAGGGCGTCTAGGGCGCTCAGAGAGCCTGCGGGTGAGTGACCGCCGCCGGCCTTCCCG GGGCAGCCTCGGGGCTAAGGGCCGGGGTGGGGGCCGTTCCCGGAGCGACGTGGACATGGACCCGGGCTCC GCCACGGCCGTGCTTGGCCCCACCCGACGAGCCACCCCTGAGCCCGGAGATGATGGGGAGCCAGGACGGT CAGGCCTGGAACTGGAACCAGAAGAACCTCCTGGGTGGAGGGAACTCGTGCCCCCAGACACCCTGCTCAG TCTGCCCAAGAGCCAAGTGAAGCGGCAAGAGGTCATCAGCGAGCTGCTCGTGACTGAGGCAGCTCACGTG CGCATGCTACGGGTACTGCATGACCTCTTCTACCAGCCCATGGCGGATGGAGGCTTCTTCCCTCTGGACG AGCTGCAGAACATCTTCCCGAGCCTGGATGAGCTCATCGAGGTGCACTCCCTGTTCCTCGATCGCTTGAT GAAGCGGAGACAAGAGAGTGGCTACCTCATTGAGGAGATCGGCGATGTGCTACTGGCCCGGTTCGATGGT GCTGAGGGCTCATGGTTCCAGAAGATCTCCTCCCGCTTCTGCAGCCGCCAGTCGTTCGCTCTAGAGCAGC TCAAAGCCAAGCAGCGCAAGGAGCCTCGGTTCTGTGCCTTTGTGCAGGAAGCTGAGAGCCGCCCGAGATG CCGGCGCCTACAGTTAAAGGACATGATCCCCACTGAGATGCAGCGACTGACCAAGTACCCACTGCTGCTA CAGAGCATCGGGCAGAACACAGAGGAGTCTACAGAACGAGGGAAAGTGGAGCTTGCAGCTGAGTGCTGCC GGGAGATTCTGCACCATGTCAATCAAGCCGTCCGTGACATGGAGGACCTGCTGCGGCTCAAGGATTACCA GCGGCGCCTGGACTTGACTCACCTACGGCAGAGCAGTGACCCTATGCTGAGCGAGTTCAAGAACCTGGAC ATCACTAAGAAGAAGTTGGTCCATGAAGGCCCCCTCACGTGGCGAGTGACCAAAGACAAAGCTATAGAAG TGCACGTGCTCTTGCTGGACGACCTGCTGCTGCTGCTCCAGCGCCAGGACGAGAGGCTGCTGCTCAAGTC CCACAGCCGGACGCTGACACCTACCCCCGATGGCAAGACCATGCTGCGGCCGGTGCTCCGGCTCACCTCT GCCATGACCCGAGAGGTGGCCACTGATCACAAAGCTTTCTACGTCATTTTTACCTGGGACCAGGAGGCCC AGATATATGAGCTGGTGGCACAGACATCTTCGGAACGCAAAAACTGGTGTAACCTCATCACTGAGACTGC TGGATCCCTGAAGGTCCCTGCCCCTGCCTCCCGCCTCAAACCCCGGCCCAGCCCAAGCAGCATCCGAGAA CCCCTGCTCAGCAGCTCTGAGAATGGCACTGGAGGCGCAGAGATGGCTCCAGCTGATGCCAGGACAGAGC GGCTCCTCAATGACCTCCTGCCCTTCTGCAGACCAGGCCCAGAGGGCCAGCTTGCTGCCACAGCCCTTCA GAAAGTACTGTCCCTGAAGCAGATCCTGCTAAGCACTGAGGAAGACAGTGGAGCGGGGCCTCCCCGCGAT GGGGATGGGGTGCCTGGTGGTAGGGCCCCCGGCCCAGTGCACACCCAGGAGATTGAGGAAAACTTGCTTA GCTTAGAGGTGGCCATCAGACAACTGGAGGAGTTGGAAGAGGAATTTTGTCGCCTAAGACCCCTCCTGTC CCAGCTTGGGGGGACTCTGTCCCCCAACCTGGCTGCACCTGAACGCTCTGCTCAGACAGGCCTTTCATGA
Translation (979 aa): MGEVAGGAAPGPPRSGLVSIIIGAEDEDFENELEANSEDQNSQFQSLEQVKRRPAHLMALLQHVALQFEP GPLLCCLHADMLSSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPSVAFELDRTRPDLISEDVQRRFIQEV VQSQQAAVSRQLEDFRSKRLMGMTPWEQELSLLEPWIGKDRGNYEARERHVAERLLSHLEETQHTISTDE EKSAAVVTAISLYMRHLGVRTKSGDKKSGRNFFRKKVMGNRRSDEPPKTKKGLSSILDPARWNRGEPSAP DCRHLKVEADEKPGPADRKGGLGMSSRDRTVGTPGQDNPGVSLHPLSTDSVDSREPGVDTPQEPGDTPPQ GPTSLEPLAPPESTEDNGETERRWKRLSGRLGRSESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPGS ATAVLGPTRRATPEPGDDGEPGRSGLELEPEEPPGWRELVPPDTLLSLPKSQVKRQEVISELLVTEAAHV RMLRVLHDLFYQPMADGGFFPLDELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDG AEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLL QSIGQNTEESTERGKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLTHLRQSSDPMLSEFKNLD ITKKKLVHEGPLTWRVTKDKAIEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTS AMTREVATDHKAFYVIFTWDQEAQIYELVAQTSSERKNWCNLITETAGSLKVPAPASRLKPRPSPSSIRE PLLSSSENGTGGAEMAPADARTERLLNDLLPFCRPGPEGQLAATALQKVLSLKQILLSTEEDSGAGPPRD GDGVPGGRAPGPVHTQEIEENLLSLEVAIRQLEELEEEFCRLRPLLSQLGGTLSPNLAAPERSAQTGLS
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