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Report for CCDS52333.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
52333.1 |
Public |
Mus musculus |
7 |
Trpc2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:22064](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:52333.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:22064](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 52333.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000124189.2 |
ENSMUSP00000116934.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000124189.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000116934.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000124189](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000116934](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001109897.2 |
NP_001103367.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001109897.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001103367.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001109897](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001103367](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001103367.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001103367.1 |
890 |
Q9R244-4 |
890 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 52333.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2673 nt): ATGGACCCCCTTTCGCCACAGCCCAACTGGACTGAGATTGTGAACAAAAAGCTCAAATTCCCCCCCACAC TCCTGCGTGCCATCCAGGAGGGCCAGCTGGGTCTTGTGCAGCAGCTGCTGGAATCCAGTTCCGATGCCTC GGGTGCTGGGCCAGGTGGTCCTCTGCGGAATGTGGAAGAGTCTGAGGACCGCTCCTGGAGGGAAGCCCTC AACCTGGCCATCCGCCTGGGCCACGAGGTCATCACTGATGTTCTGCTGGCCAATGTCAAATTCGACTTTC GGCAGATCCACGAAGCCCTGCTAGTGGCTGTGGACACAAACCAGCCAGCAGTGGTGCGTCGCCTGCTAGC GCGGCTGGAGCGGGAGAAAGGTCGAAAAGTAGACACCAAGTCTTTCTCTCTAGCCTTCTTTGACTCATCG ATTGATGGCTCCCGCTTTGCCCCTGGTGTCACTCCACTCACACTGGCCTGCCAGAAGGACCTGTATGAGA TTGCCCAGCTGCTTATGGACCAGGGCCATACCATTGCTCGGCCCCACCCAGTTTCCTGTGCCTGCCTCGA GTGCAGCAATGCCCGCCGATACGACCTGCTGAAGTTCTCACTATCCCGAATCAACACCTACCGAGGCATT GCAAGCCGGGCTCACCTCTCGCTGGCCAGTGAGGATGCCATGCTGGCCGCTTTTCAGCTCAGCCGGGAGC TCAGGCGCCTTGCACGAAAGGAGCCTGAGTTTAAGCCTCAGTACATTGCCCTGGAGTCTCTCTGCCAGGA CTATGGCTTCGAGTTGCTGGGCATGTGCCGAAATCAGAGTGAGGTCACCGCAGTGCTCAATGACCTGGGT GAGGATAGTGAGACTGAGCCTGAGGCTGAGGGCCTGGGTCAGGCCTTTGAGGAGGGCATCCCCAACCTGG CAAGACTGCGGTTGGCTGTCAACTACAACCAGAAACAGTTTGTAGCACATCCCATCTGCCAGCAAGTTCT GTCTTCCATCTGGTGTGGGAACCTGGCTGGCTGGCGTGGAAGCACCACCATCTGGAAGCTCTTTGTTGCC TTCCTCATCTTCCTCACCATGCCCTTCCTCTGCATTGGCTACTGGCTGGCGCCCAAGTCCCAGCTGGGCC GCCTGCTGAAGATCCCGGTGCTGAAGTTCCTGCTGCATTCTGCCTCCTACCTGTGGTTCCTTATCTTCTT GCTGGGAGAGTCTCTGGTCATGGAGACCCAGCTGAGCACCTTCAAAGGCCGCAGCCAGAGTGTCTGGGAG ACTTCACTACATATGATCTGGGTCACAGGCTTCCTATGGTTTGAATGCAAGGAGGTGTGGATCGAGGGCT TGCGGAGCTACCTCCTGGACTGGTGGAACTTCCTGGACGTGGTCATCCTGTCCCTGTACTTGGCATCCTT TGCACTGCGCCTCCTCCTGGCTGGGCTTGCCTACATGCACTGCCGTGATGCCTCAGACAGCACCACCTGC CGCTATTTCACCACAGCTGAGAGAAGTGAGTGGCGTACAGAGGACCCCCAGTTTCTGGCTGAGGTGCTCT TTGCTGTCACCAGCATGCTCAGCTTCACCCGACTGGCATATATTCTGCCAGCTCACGAATCGCTGGGCAC ACTGCAGATCTCCATCGGCAAGATGATTGACGACATGATCCGGTTCATGTTCATCCTCATGATCATCCTG ACTGCCTTCCTCTGTGGCCTCAACAACATCTATGTGCCCTACCAGGAATCCGAGAAGCTAGGCAATTTCA ACGAAACGTTCCAGTTTCTCTTTTGGACCATGTTCGGCATGGAAGAGCACACAGTGGTGGACATGCCTCA GTTCCTGGTGCCTGAGTTCGTGGGCAGGGCCATGTACGGCATCTTTACCATCGTCATGGTCATTGTGCTA CTTAACATGCTTATTGCCATGATCACCAACTCCTTCCAGAAGATCGAGGATGATGCTGATGTGGAGTGGA AGTTTGCTCGCTCCAAGCTCTACCTGTCCTACTTCCGAGAGGGTCTGACGCTGCCTGTGCCCTTTAACAT CCTGCCATCCCCAAAGGCCGCCTTCTACCTCGTCAGGAGAATTTTCCGGTTCCTTTGCTGTGGCTCCTCC TGCTGCAAAGCCAAGAAGTCGGACTACCCGCCCATCGGGACCTTTACCAACCCCGGGGCAAGGGCGGGCT CCGCCGGGGAAGGAGAACGCGTGTCCTACCGCCTTCGAGTCATCAAGGCTCTGGTGCAGCGCTACATAGA GACTGCCCGGCGCGAGTTCGAGGAGACCCGTCGGAAAGACCTGGGCAACAGACTGACAGAGCTGACCAAG ACTGTGTCTCGACTGCAAAGCGAGGTGGCCAGTGTGCAGAAGAACCTGGCGGCGGGAGGGGCACCACGGC CTCCGGATGGTGCCAGCATCCTCAGTAGATACATCACCCGAGTGCGCAACAGCTTCCAGAACCTGGGCCC CCCTACCTCTGACACCCCAGCAGAGCTGACTATGCCTGGGATTGTGGAGACCGAAGTCTCTTTAGGAGAT GGCCTTGATGGCACAGGTGAAGCTGGAGCTCCCGCTCCTGGAGAGCCCGGCTCTTCCTCCTCTGCCCATG TGCTGGTTCACAGGGAGCAAGAAGCAGAGGGGTCAGGGGACTTGCTCCTGGAAGGAGATCTGGAGACCAA GGGCGAGTCCTAA
Translation (890 aa): MDPLSPQPNWTEIVNKKLKFPPTLLRAIQEGQLGLVQQLLESSSDASGAGPGGPLRNVEESEDRSWREAL NLAIRLGHEVITDVLLANVKFDFRQIHEALLVAVDTNQPAVVRRLLARLEREKGRKVDTKSFSLAFFDSS IDGSRFAPGVTPLTLACQKDLYEIAQLLMDQGHTIARPHPVSCACLECSNARRYDLLKFSLSRINTYRGI ASRAHLSLASEDAMLAAFQLSRELRRLARKEPEFKPQYIALESLCQDYGFELLGMCRNQSEVTAVLNDLG EDSETEPEAEGLGQAFEEGIPNLARLRLAVNYNQKQFVAHPICQQVLSSIWCGNLAGWRGSTTIWKLFVA FLIFLTMPFLCIGYWLAPKSQLGRLLKIPVLKFLLHSASYLWFLIFLLGESLVMETQLSTFKGRSQSVWE TSLHMIWVTGFLWFECKEVWIEGLRSYLLDWWNFLDVVILSLYLASFALRLLLAGLAYMHCRDASDSTTC RYFTTAERSEWRTEDPQFLAEVLFAVTSMLSFTRLAYILPAHESLGTLQISIGKMIDDMIRFMFILMIIL TAFLCGLNNIYVPYQESEKLGNFNETFQFLFWTMFGMEEHTVVDMPQFLVPEFVGRAMYGIFTIVMVIVL LNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTLPVPFNILPSPKAAFYLVRRIFRFLCCGSS CCKAKKSDYPPIGTFTNPGARAGSAGEGERVSYRLRVIKALVQRYIETARREFEETRRKDLGNRLTELTK TVSRLQSEVASVQKNLAAGGAPRPPDGASILSRYITRVRNSFQNLGPPTSDTPAELTMPGIVETEVSLGD GLDGTGEAGAPAPGEPGSSSSAHVLVHREQEAEGSGDLLLEGDLETKGES
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