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Report for CCDS52467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52467.1 Public Mus musculus 8 Saxo5 23 108 98 CCDS HistoryNCBI Gene:76406Re-query CCDS DB by CCDS ID:52467.1Re-query CCDS DB by GeneID:76406See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047265.12 ENSMUSP00000043586.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047265.12Link to Ensembl Protein Viewer:ENSMUSP00000043586.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047265Re-query CCDS DB by Protein ID:ENSMUSP00000043586
Original member Current member EBI ENSMUST00000161680.1 ENSMUSP00000124916.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161680.1Link to Ensembl Protein Viewer:ENSMUSP00000124916.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161680Re-query CCDS DB by Protein ID:ENSMUSP00000124916
Original member Current member NCBI NM_029598.1 NP_083874.1 Accepted alive Link to Nucleotide Sequence:NM_029598.1Link to Protein Sequence:NP_083874.1Re-query CCDS DB by Nucleotide ID:NM_029598Re-query CCDS DB by Protein ID:NP_083874Link to BLAST:NP_083874.1

Chromosomal Locations for CCDS 52467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3475849 3476407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3478986 3479089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3479180 3479280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3483460 3483572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3483661 3483770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3484052 3484253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3485658 3485743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3486931 3487158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGCCTGTGTGCCCGTTGTCCCTGGAGTTCCTCAAGGCCTCACACTTTTCTTTGGGTCCTGATCCGCGGC
TGCATGATGGCACTATGCAGGGCACATCGCACAGGGACTTCCCAGCCTATTCCGCTGTCACCTTGGTCCA
GCCCCCCTCGTCAGCACCACAGCAAGGCACAATCTTCCAAAGGGAAGCGCGGTGGGCTTCCCAGAAGCAT
GTATCGGAGATGCGCCGTGCGTTCTCGCCACCGCCCACGTTACAGTCGCAAGATGAGCTACGGGAGCGAG
CAATTGAGCACTCGCAAGCCATGCAGATAAGCAATCTGCACTTGCACGCGGATATGCGTCCTGGTCTCAA
CTTGTCCATTGCACGTACTGACTATGGCTGGCCAGAGCTACCACCAAGCGCCCGCCTGGACATCCGAAGC
GCACGCCTCCTCTTTGACCGGGATTCAATGCCCTCGGGGGACAGGAAGCAGCTGCGCATGCCGCTCACCT
CGTACCAGGCACACTATCCGCCCTATGATGCCATCACCCCTCAGCCTTGTGTGCCCTGCAGCCATCTAGG
GGGTCCTAACACCCTGAAGTGGAACTACAAGGGACAGAAAGACACCTCCTACAAGAAGCAGTTCCAAGCT
CTCCCAAGCCCACCAGCCTTGATGTGTAAGAGGGCCTCCTCCAGTGTAAACCTAGGAGACAGCAAGGTTG
GCTATAGTCCCCTGTGTTCCCTCGTGAAGCAGACCTACACACCTCAGGGGCTGTCCCCATACAGGTATGA
CAAGGTCCAGGCTGCAGCCCACATCCACCAGGTGAACGTTGGTCCTGGAGACCGCCTGTTCCATGACAGA
ACTACCATGAATGACTACTTCTACTCCAAAGAGCCAGAGCCTTTTGTTCTTCACCATGATAAGACTCCGG
AGTCAAACATCCTGAAAGGAAACTGGTGCCCTGGCCCTGGCAGCCTCCATACCTCCTCAAAGTTCTTCTA
CGGTGAGCCACCTCCTGCGACACAGCCTCCTGGCCGACAGGTGTCCCATGAGAAACTGAAGGATCACATA
ATCTTGGGAGACTCAAAGCTGCTCGGAAACTTCTTCCAAACCTCCATGAGCTCAGACTATTGCCCTCCGA
CTACCCCCATAAAACAAAGAACCCTCAAGTTCTCTTTGTTGGAGAGTAACCTCCCTGAGGGCACAGGTGA
ATTAGACTTTTTCACCACGAACCAAATGATGATGAAGCCGCATGGAATAGTTCGAGCCTCTATCACTGAA
GATTTGTTACAGAAGTGCAAATACAGTCACATAGAGCCCCCACTGGGCAGACAACGTTTCTTCTCTACTC
AGAATCAAGACGAGTATCCCTTCAAGTACCAGGGCCCATTGGTCCAGAAGCTAAGTAGCATGCATGAGAG
CCATCTGCCAATGGGCACACCCAAGTACCTTGGCTGCTGGCATGAGAAAGCAGATCCTCGGGGCCCCCAG
ATCCCTATGTATCCTTGCCTGAGTCAGCAATAA

Translation (500 aa):
MPVCPLSLEFLKASHFSLGPDPRLHDGTMQGTSHRDFPAYSAVTLVQPPSSAPQQGTIFQREARWASQKH
VSEMRRAFSPPPTLQSQDELRERAIEHSQAMQISNLHLHADMRPGLNLSIARTDYGWPELPPSARLDIRS
ARLLFDRDSMPSGDRKQLRMPLTSYQAHYPPYDAITPQPCVPCSHLGGPNTLKWNYKGQKDTSYKKQFQA
LPSPPALMCKRASSSVNLGDSKVGYSPLCSLVKQTYTPQGLSPYRYDKVQAAAHIHQVNVGPGDRLFHDR
TTMNDYFYSKEPEPFVLHHDKTPESNILKGNWCPGPGSLHTSSKFFYGEPPPATQPPGRQVSHEKLKDHI
ILGDSKLLGNFFQTSMSSDYCPPTTPIKQRTLKFSLLESNLPEGTGELDFFTTNQMMMKPHGIVRASITE
DLLQKCKYSHIEPPLGRQRFFSTQNQDEYPFKYQGPLVQKLSSMHESHLPMGTPKYLGCWHEKADPRGPQ
IPMYPCLSQQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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