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Report for CCDS52590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52590.1 Public Mus musculus 8 Zfp617 23 108 98 CCDS HistoryNCBI Gene:170938Re-query CCDS DB by CCDS ID:52590.1Re-query CCDS DB by GeneID:170938See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119003.1 ENSMUSP00000112926.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119003.1Link to Ensembl Protein Viewer:ENSMUSP00000112926.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119003Re-query CCDS DB by Protein ID:ENSMUSP00000112926
Original member Current member NCBI NM_133358.3 NP_579936.2 Accepted alive Link to Nucleotide Sequence:NM_133358.3Link to Protein Sequence:NP_579936.2Re-query CCDS DB by Nucleotide ID:NM_133358Re-query CCDS DB by Protein ID:NP_579936Link to BLAST:NP_579936.2

Chromosomal Locations for CCDS 52590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71922970 71922972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71928202 71928328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71929138 71929198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71932019 71933507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGAGTCAGTGACTTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGACTTTGCTGAATCCTT
CACAGGAAAATCTTTACAGAGCGGTGATGAGAGAAACCATCAGGAACCTGCATGATATAGGACAGAAATT
GGGAGAACAGAACACTGAAAATGCATACAAAAATCCTGGGGGAAATCTAAGATACCAAGTGGTAGAGAAG
CTTTGTGAGTATGAAGAAGATAGTCAATGGGAAGAAATCTTCAGTGAGATTCCAGATCCTGTGGTGAGCC
AGAAAACTGGAGAAAAGCCCTGTGAAAGCCATGTGTATGGAGAAGATATCACTGGTCATTCATCTCTAAA
TGTGTCCCTCAGAGGTCAGACTAGATGCAAAACACATGAGTATAAAGAACACGGAGAGAAGCCATGTAAA
TGTAAAGACAGTGGAGTGGCTTTTGGTTCTCCCCAGAGCTTTCTGAAGCATGAACAAATTTACACACAAG
AGAAACCCTATGCCTGTAAACAGTGTGACAAAGCCTTTAAGTATCTCAGTTCTCTTCAAAATCATAAAAG
GATCCATAATAGAGAAAGAAACCATGCGTGTAAACAATGTGGGAAATCTTTTAAGAGACAGAGTAATGTT
CAAGCCCATGAGAGAAATCACACTGGAGAGAAACCCTATGTGTGTAAGCACTGTGGGAAAGCCTATACTT
CCTACAGTACCCTTCGAGCACATGAAAGAAGTCACACAGGAGAGAAACCCTATGTGTGTAAGCATTGTGG
GAAAGCCTATACTTCCTACAGTACCCTTCGAGCACATGAAAGAAGTCACACAGGAGAGAAACCCTATGTG
TGTAAGCATTGTGGGAAAGCCTATACTACCTACAATACCCTTCGAGCACATGAAAGAAGTCACACAGGAG
AGAAACCCTATGTGTGTAAGCATTGTGGGAAAGCCTATACTTCCTACAGTACCCTTCGAGCACATGAAAG
AAGTCACACAGGAGAGAAACCCTATGTGTGTAAGCATTGTGGGAAAGCATTCACTCAATCTAGCTACCTT
CGAATACATAAAAGAACTCACACAGGAGAGAAACCCTACATCTGTAAGCAATGTGGGAAAGCCTTTGCTC
GTTCTAGCCACCTGCAAATACATAAAAGAAGTCATACAGGAGAAAAACCCTATGTATGTAAGCAGTGTGG
GAAAGCCTTTGCTCAATCCAGTTACCTTCACATACATCAAAGAAGTCACACTGGAGAGAAACCTTACGTA
TGTAAGCAGTGTGGGAAAGCCTTCACTCGTTCTAGCCACCTGCAAATACATAAAATAACTCATACTGGAG
AGAAACCCTACTCATGTAAGCTTTGTGGGAAAGCCTTTACTCATTCTAATTACCTTCAGATACATAAAAG
AATTCACACAGGAGAAAAACCTTATGTGTGTAAGGAGTGTGGGAAAGCCTTTGCTCGTTCCACTTCCCTT
CACATACATGAAGGAACTCACAGTGGAGAGAAACCTTATGTATGCAAGCAATGTGGGAAAGCCTTCACTT
TGTCCAGTTCTCTTCGAAGGCATGATGTAGTTCATTCAGAAGAGAAACCCTATATTTGTAAGTGTTGTGG
GAAAACCTTTGGTTGTTACAGTAGCGTTCAGAAACATGAAAAGACTCATAGAGAAAACAGACTCTGTTAG

Translation (559 aa):
MESVTFEDVAVNFTLEEWTLLNPSQENLYRAVMRETIRNLHDIGQKLGEQNTENAYKNPGGNLRYQVVEK
LCEYEEDSQWEEIFSEIPDPVVSQKTGEKPCESHVYGEDITGHSSLNVSLRGQTRCKTHEYKEHGEKPCK
CKDSGVAFGSPQSFLKHEQIYTQEKPYACKQCDKAFKYLSSLQNHKRIHNRERNHACKQCGKSFKRQSNV
QAHERNHTGEKPYVCKHCGKAYTSYSTLRAHERSHTGEKPYVCKHCGKAYTSYSTLRAHERSHTGEKPYV
CKHCGKAYTTYNTLRAHERSHTGEKPYVCKHCGKAYTSYSTLRAHERSHTGEKPYVCKHCGKAFTQSSYL
RIHKRTHTGEKPYICKQCGKAFARSSHLQIHKRSHTGEKPYVCKQCGKAFAQSSYLHIHQRSHTGEKPYV
CKQCGKAFTRSSHLQIHKITHTGEKPYSCKLCGKAFTHSNYLQIHKRIHTGEKPYVCKECGKAFARSTSL
HIHEGTHSGEKPYVCKQCGKAFTLSSSLRRHDVVHSEEKPYICKCCGKTFGCYSSVQKHEKTHRENRLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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