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Report for CCDS52600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52600.1 Public Mus musculus 8 Tom1 23 108 98 CCDS HistoryNCBI Gene:21968Re-query CCDS DB by CCDS ID:52600.1Re-query CCDS DB by GeneID:21968See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078847.12 ENSMUSP00000077891.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078847.12Link to Ensembl Protein Viewer:ENSMUSP00000077891.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078847Re-query CCDS DB by Protein ID:ENSMUSP00000077891
Original member NCBI NM_001136259.1 NP_001129731.1 Updated not alive Link to Nucleotide Sequence:NM_001136259.1Link to Protein Sequence:NP_001129731.1Re-query CCDS DB by Nucleotide ID:NM_001136259Re-query CCDS DB by Protein ID:NP_001129731
Current member NCBI NM_001136259.2 NP_001129731.1 Accepted alive Link to Nucleotide Sequence:NM_001136259.2Link to Protein Sequence:NP_001129731.1Re-query CCDS DB by Nucleotide ID:NM_001136259Re-query CCDS DB by Protein ID:NP_001129731Link to BLAST:NP_001129731.1

Chromosomal Locations for CCDS 52600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 75033776 75033827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75047993 75048077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75050190 75050268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75051508 75051657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75051923 75052057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75052150 75052296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75054577 75054693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75057155 75057288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75058441 75058474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75058813 75058906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75059189 75059260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75060433 75060553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75064394 75064469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75067522 75067581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75069096 75069135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75069250 75069404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGACTTTCTCCTGGGAAATCCGTTCAGCTCTCCGGTGGGACAACGGATCGAGAAAGCTACAGATGGCT
CCCTGCAGAGCGAGGACTGGGCCCTCAACATGGAAATCTGTGACATCATCAACGAGACGGAGGAAGGCCC
CAAAGATGCCTTCCGAGCAGTGAAGAAGCGAATTATGGGGAATAAGAATTTCCATGAGGTCATGCTGGCC
CTTACGGTCTTGGAAACATGTGTTAAGAACTGTGGGCACCGCTTCCATGTACTGGTGGCCAACCAGGACT
TTGTAGAGAATGTGCTGGTGAGGACCATCCTGCCGAAGAACAATCCACCCACCATTGTGCATGACAAGGT
GTTGAACCTCATCCAGTCCTGGGCTGACGCGTTCCGCAGCTCACCTGATTTGACAGGTGTTGTTGCTGTC
TACGAGGACCTGCGAAGGAAGGGCCTAGAATTTCCCATGACTGACCTGGACATGCTGTCGCCCATCCACA
CACCCCAGAGAACTGTATTCAACTCAGAGACACCATCCAGACAGAACTCTGTGAGTTCCAACACCAGTCA
GCGTGGAGACCTGAGCCAGCATGCCACCCCTCTGCCCACTCCAGCTGTTCTCCCGGGTGACTCACCCATC
ACACCGACTCCTGAGCAGATTGGGAAGCTGCGCAGTGAGCTGGAGATGGTGAGCGGAAACGTGCGAGTGA
TGTCAGAGATGCTGACAGAGCTGGTGCCCACCCAGGTAGAGCCTGCAGACCTGGAGCTACTACAGGAACT
GAACCGCACCTGCCGTGCCATGCAGCAGCGGATCCTGGAGCTTATCCCACGCATCTCCAATGAGCAGCTG
ACGGAGGAGCTGCTCATGATCAACGACAACCTCAACAACGTGTTTCTGCGCCATGAACGGTTTGAACGCT
TCCGAACAGGCCAGACTGCTAAGGCCTCCAGTGAAGCTGAGCTAGCTACTGACCTGATTGACATGGGTCC
TGACCCCGCAGCCACAAACAACCTCTCATCTCAACTGGCAGGAATGAACAATCGACTGCTCAGCCTCAGT
AATCACTTCCTACTTGAAGAAGGAAAGAAGGAATGGGCCCCTCTTCAAGACCTTGGCTCCAGAAGTGTGA
GAGCTGGCCTGCAGTCTCTGGAGACCTCAGGTCACCTGGAAGATGACTTTGACATGTTTGCTCTGACTCG
GGGCAGCTCACTGGCTGACCAACGGAAAGGGGTCAAATATGAAGCTCCCCAAACCACAGATGGCCTGGCT
GGGGCCCTAGATGCCCGGCAGCAGAGCACCGGAGCGATCCCAGCCACTCAGGCCCGCATCATGGAGGACA
TTGAGCAGTGGCTGTCCACAGATGTGGGGAACAGTGCTGAGGAGCCCTCTGGTGTCACCAGTGAAGAATT
TGACAAATTTCTGGAAGAACGAGCCAAAGCTGCTGATCGACTTCCCAACCTGGCCAGCCCTTCAGCCGAG
GGACCCCCCAGACCATCTCCTGGAACAGCCCCTCGGAGGAAGACCCAGGAGAAGGACGATGACATGCTGT
TTGCCTTATGA

Translation (516 aa):
MDFLLGNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLA
LTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVAV
YEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETPSRQNSVSSNTSQRGDLSQHATPLPTPAVLPGDSPI
TPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQVEPADLELLQELNRTCRAMQQRILELIPRISNEQL
TEELLMINDNLNNVFLRHERFERFRTGQTAKASSEAELATDLIDMGPDPAATNNLSSQLAGMNNRLLSLS
NHFLLEEGKKEWAPLQDLGSRSVRAGLQSLETSGHLEDDFDMFALTRGSSLADQRKGVKYEAPQTTDGLA
GALDARQQSTGAIPATQARIMEDIEQWLSTDVGNSAEEPSGVTSEEFDKFLEERAKAADRLPNLASPSAE
GPPRPSPGTAPRRKTQEKDDDMLFAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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