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Report for CCDS52670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52670.1 Public Mus musculus 8 Il34 23 108 98 CCDS HistoryNCBI Gene:76527Re-query CCDS DB by CCDS ID:52670.1Re-query CCDS DB by GeneID:76527See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150680.1 ENSMUSP00000114398.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150680.1Link to Ensembl Protein Viewer:ENSMUSP00000114398.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150680Re-query CCDS DB by Protein ID:ENSMUSP00000114398
Original member Current member NCBI NM_029646.3 NP_083922.1 Accepted alive Link to Nucleotide Sequence:NM_029646.3Link to Protein Sequence:NP_083922.1Re-query CCDS DB by Nucleotide ID:NM_029646Re-query CCDS DB by Protein ID:NP_083922Link to BLAST:NP_083922.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083922.1 219 Q8R1R4-2 219 100% 0 0

Chromosomal Locations for CCDS 52670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 110742445 110742448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110742644 110742779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110746818 110746935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110748243 110748404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110748663 110748740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110749425 110749558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110755231 110755258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGCCCTGGGGACTCGCCTGGCTATACTGTCTTGGGATCCTACTTGACGTGGCTTTGGGAAACGAGAATT
TGGAGATATGGACTCTGACCCAAGATAAGGAGTGTGACCTTACAGGCTACCTTCGGGGCAAGCTGCAGTA
CAAGAACCGGCTTCAGTACATGAAACATTACTTCCCCATCAACTACAGGATTGCTGTGCCTTATGAGGGG
GTACTCAGAGTGGCCAACATCACAAGGCTGCAGAAGGCTCACGTGAGTGAGCGAGAGCTTCGGTACCTGT
GGGTCTTGGTGAGTCTCAATGCCACTGAGTCTGTGATGGATGTACTTCTCGAGGGCCACCCGTCCTGGAA
GTATCTACAGGAGGTTCAGACATTGCTGGAGAACGTACAGCGGAGCCTCATGGCCGTTGGTGTACACCTG
CCGGGACACGTACTTGTGACCCTGCTCAGCCAGCTGCCTGGCCTCCCCAGCCCATGGGCCAGATCATTTG
ACACCAGCTGGGAGCTTCTGATGATGAAAGGATGTGGAGATTGGCCCTCACGTGGAAGCTGTGTTATCTC
TTCTGAGTACTCCAGGCCTAAGCCTGAAGCTGGTGCGGCCCAAAGCCTTGCTGGACAACTGCTTCCGGGT
CATGGAACTGCTGTACTGTTCTTGCTGTAA

Translation (219 aa):
MPWGLAWLYCLGILLDVALGNENLEIWTLTQDKECDLTGYLRGKLQYKNRLQYMKHYFPINYRIAVPYEG
VLRVANITRLQKAHVSERELRYLWVLVSLNATESVMDVLLEGHPSWKYLQEVQTLLENVQRSLMAVGVHL
PGHVLVTLLSQLPGLPSPWARSFDTSWELLMMKGCGDWPSRGSCVISSEYSRPKPEAGAAQSLAGQLLPG
HGTAVLFLL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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