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Report for CCDS52691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52691.1 Public Mus musculus 8 Mthfsd 23 108 98 CCDS HistoryNCBI Gene:234814Re-query CCDS DB by CCDS ID:52691.1Re-query CCDS DB by GeneID:234814See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52691.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116415.8 ENSMUSP00000112116.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116415.8Link to Ensembl Protein Viewer:ENSMUSP00000112116.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116415Re-query CCDS DB by Protein ID:ENSMUSP00000112116
Original member NCBI NM_001166482.1 NP_001159954.1 Updated not alive Link to Nucleotide Sequence:NM_001166482.1Link to Protein Sequence:NP_001159954.1Re-query CCDS DB by Nucleotide ID:NM_001166482Re-query CCDS DB by Protein ID:NP_001159954
Current member NCBI NM_001166482.2 NP_001159954.1 Accepted alive Link to Nucleotide Sequence:NM_001166482.2Link to Protein Sequence:NP_001159954.1Re-query CCDS DB by Nucleotide ID:NM_001166482Re-query CCDS DB by Protein ID:NP_001159954Link to BLAST:NP_001159954.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159954.1 372 Q3URQ7-1 372 100% 0 0

Chromosomal Locations for CCDS 52691.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 121098712 121099152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121101119 121101244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121101424 121101536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121102914 121103004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121104392 121104505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121105718 121105831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121106870 121106973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121108288 121108303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGAGACCCAGGAGGGTGTCTCCAAACAAAGCATACGTGAACGGATTTGGGACTACATGGAATCCCATG
ATATAGCTGACTTTCCCCGACCCGTTCATCACAGGATCCCCAACTTCAAGGGTGCTGCTCAGGCTGCGGG
GCACCTCCCACACCTGCAAGCTTTCCATGTGGCCAGAACCATTAAAGTCAACCCGGACGCTCCTCAGAGA
AACGCCCGCTTCCTGGTGCTGGAGAGCAAAAAAACACTGCTGGTCCCAACACCACGACTGCGAACAGGGC
TGTTTAACAAGATCACGCCACCCCCTGGAGCCACCAAAGACATTCTGAGGAAATGTGCCACCTCCCAGGG
TGTGCGGAATTTCAGCGTCCCAGTGGGCTTGGATTCCAGTGTTCTTGTGGATCTAGTTGTGGTGGGATCT
GTTGCTGTGTCTGAGAAAGGCTGGCGAATTGGGAAAGGGGAAGGCTATGCTGATCTTGAATACGCCATGA
TGGTGTCAATGGGAGCCGTCCACAAGGGGACACCGGTTGTCACAATTGTCCACGACTGCCAGGTCGTAGA
CATCCCCGAGGCTCTTGTGGAGGACCACGACCTCACAGTTGACTACATCCTCACTCCCACCAGGGTCATC
ACTACAGGCTGTGCACGCCCAAAGCCAACGGGCATCATGTGGTCCAAGGTCAGCTGTGAGATGCTTACGA
AAATCCCAGTGCTCAGGAACCTCCGGGAGAGAGAGAAACAGGCTGGGAAGGATGTCACTCTCCGGGACGA
GCCTGGCAGCCAGCAGCCAGCTCCAGGCCCCATCAGGAGACCCCAGGATAGACCACAAACAGGTTCTCGA
GGAGGGTCCCGTAGTCCCCTGCAGGGGGCGGACACCCAACTAGCTGCCACTGTGTGTGTGGGAAACCTGC
CCTTCACTACTCGTGTGCGTGAGCTGAAGAGAGTCCTCCAGGAGCTGGGGGTGGTGCCCCTGAGGCTTAC
CTGGCAGGGGCCACAGCACAGGGCAGTTCTACACTATACAGACTCAGCTGCTGCCCAGCAGGCCGCCTCT
CTCCTACAGGGCCTACGTCTGGGTGCCAACGCCTTGAGGGTGTCACTGGGGCAGCAGAGGGATATGTGA

Translation (372 aa):
METQEGVSKQSIRERIWDYMESHDIADFPRPVHHRIPNFKGAAQAAGHLPHLQAFHVARTIKVNPDAPQR
NARFLVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVRNFSVPVGLDSSVLVDLVVVGS
VAVSEKGWRIGKGEGYADLEYAMMVSMGAVHKGTPVVTIVHDCQVVDIPEALVEDHDLTVDYILTPTRVI
TTGCARPKPTGIMWSKVSCEMLTKIPVLRNLREREKQAGKDVTLRDEPGSQQPAPGPIRRPQDRPQTGSR
GGSRSPLQGADTQLAATVCVGNLPFTTRVRELKRVLQELGVVPLRLTWQGPQHRAVLHYTDSAAAQQAAS
LLQGLRLGANALRVSLGQQRDM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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