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Report for CCDS52703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52703.1 Public Mus musculus 8 Rab4a 23 108 98 CCDS HistoryNCBI Gene:19341Re-query CCDS DB by CCDS ID:52703.1Re-query CCDS DB by GeneID:19341See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117702.1 ENSMUSP00000113401.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117702.1Link to Ensembl Protein Viewer:ENSMUSP00000113401.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117702Re-query CCDS DB by Protein ID:ENSMUSP00000113401
Original member Current member EBI ENSMUST00000118535.7 ENSMUSP00000113886.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118535.7Link to Ensembl Protein Viewer:ENSMUSP00000113886.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118535Re-query CCDS DB by Protein ID:ENSMUSP00000113886
Original member NCBI NM_009003.3 NP_033029.2 Updated not alive Link to Nucleotide Sequence:NM_009003.3Link to Protein Sequence:NP_033029.2Re-query CCDS DB by Nucleotide ID:NM_009003Re-query CCDS DB by Protein ID:NP_033029
NCBI NM_009003.4 NP_033029.2 Updated not alive Link to Nucleotide Sequence:NM_009003.4Link to Protein Sequence:NP_033029.2Re-query CCDS DB by Nucleotide ID:NM_009003Re-query CCDS DB by Protein ID:NP_033029
Current member NCBI NM_009003.5 NP_033029.2 Accepted alive Link to Nucleotide Sequence:NM_009003.5Link to Protein Sequence:NP_033029.2Re-query CCDS DB by Nucleotide ID:NM_009003Re-query CCDS DB by Protein ID:NP_033029Link to BLAST:NP_033029.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033029.2 218 P56371 218 100% 0 0

Chromosomal Locations for CCDS 52703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123806136 123806166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123823814 123823894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123827324 123827438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123828996 123829058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123830233 123830387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123832803 123832898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123834015 123834130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGCGCAGACCGCCATGTCCGAGACTTACGATTTCTTGTTTAAATTCTTGGTCATCGGAAATGCGGGAA
CTGGCAAATCTTGCTTGCTTCATCAGTTCATTGAAAAGAAATTCAAAGATGACTCAAATCATACCATAGG
AGTGGAATTTGGCTCAAAGATAATAAATGTCGGTGGTAAATATGTAAAGTTACAGATATGGGACACGGCC
GGCCAGGAGCGGTTCAGGTCTGTGACGAGAAGCTACTACAGAGGTGCAGCTGGGGCACTCCTTGTCTATG
ACATCACCAGCCGAGAAACCTACAATGCGCTTACTAATTGGTTAACAGATGCCAGAATGCTGGCGAGCCA
GAACATCGTCCTTATCCTCTGCGGGAACAAGAAGGACTTGGATGCCGACCGGGAAGTCACCTTCCTCGAA
GCCTCCAGGTTCGCACAAGAGAATGAGCTGATGTTCCTGGAAACCAGTGCACTGACTGGCGAGAACGTCG
AAGAGGCTTTCATGCAGTGTGCAAGGAAAATACTTAACAAAATTGAATCAGGTGAACTGGACCCCGAGAG
GATGGGCTCTGGCATCCAGTATGGAGACGCTGCCCTGAGACAGCTGCGGTCACCTCGGCGTACACAGGCT
CCAAGTGCACAGGAGTGTGGCTGCTAG

Translation (218 aa):
MAQTAMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA
GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLE
ASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIESGELDPERMGSGIQYGDAALRQLRSPRRTQA
PSAQECGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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