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Report for CCDS52736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52736.1 Public Mus musculus 9 Carm1 23 108 98 CCDS HistoryNCBI Gene:59035Re-query CCDS DB by CCDS ID:52736.1Re-query CCDS DB by GeneID:59035See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115395.9 ENSMUSP00000111053.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115395.9Link to Ensembl Protein Viewer:ENSMUSP00000111053.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115395Re-query CCDS DB by Protein ID:ENSMUSP00000111053
Original member Current member NCBI NM_153141.1 NP_694781.1 Accepted alive Link to Nucleotide Sequence:NM_153141.1Link to Protein Sequence:NP_694781.1Re-query CCDS DB by Nucleotide ID:NM_153141Re-query CCDS DB by Protein ID:NP_694781Link to BLAST:NP_694781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694781.1 585 Q9WVG6-2 585 100% 0 0

Chromosomal Locations for CCDS 52736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21547008 21547230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21569455 21569580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21574487 21574593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21575414 21575518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21579399 21579509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21580309 21580486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21583039 21583129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21583511 21583592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21586167 21586252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21586445 21586534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21586901 21587038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21587125 21587214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21587291 21587403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21587508 21587585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21588049 21588188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGGCAGCGGCGGCAGCGACGGCGGTGGGGCCGGGTGCGGGGAGCGCTGGGGTGGCGGGCCCGGGCGGCG
CGGGGCCCTGCGCTACAGTGTCTGTGTTCCCGGGCGCCCGCCTCCTCACTATCGGCGACGCGAACGGCGA
GATCCAGCGGCACGCGGAGCAGCAGGCGCTGCGCCTTGAGGTGCGCGCCGGACCAGACGCGGCGGGCATC
GCCCTCTACAGCCATGAAGATGTGTGTGTTTTCAAGTGCTCGGTGTCCCGAGAGACAGAGTGCAGTCGTG
TGGGCAGACAGTCCTTCATCATCACCCTGGGCTGCAACAGCGTCCTCATCCAGTTTGCCACACCCCACGA
TTTCTGTTCTTTCTACAACATCCTGAAAACCTGTCGGGGCCACACACTGGAGCGCTCTGTGTTCAGTGAG
CGGACAGAGGAATCCTCAGCTGTGCAGTACTTCCAGTTCTATGGCTACCTATCCCAGCAGCAGAACATGA
TGCAGGACTATGTGCGGACAGGCACCTACCAGCGTGCGATCCTGCAGAACCACACGGACTTCAAGGACAA
GATCGTTCTAGATGTGGGCTGTGGCTCTGGGATCCTGTCATTTTTTGCTGCTCAAGCAGGAGCCAGGAAA
ATTTATGCAGTGGAAGCCAGCACCATGGCTCAGCATGCAGAGGTCCTGGTGAAGAGTAACAATCTGACAG
ACCGCATCGTGGTCATCCCTGGCAAAGTAGAGGAGGTCTCATTGCCTGAGCAAGTGGACATTATCATCTC
AGAGCCCATGGGCTACATGCTCTTCAATGAACGAATGCTCGAGAGCTACCTCCATGCCAAAAAGTACCTG
AAGCCTAGTGGAAACATGTTCCCCACCATTGGTGATGTCCACCTCGCACCCTTCACTGATGAACAGCTCT
ACATGGAGCAGTTCACCAAAGCCAACTTCTGGTACCAGCCATCCTTCCATGGAGTGGACCTGTCGGCCCT
CAGAGGCGCCGCTGTGGATGAGTACTTCCGGCAACCTGTGGTGGACACATTTGACATCCGGATCCTGATG
GCCAAATCTGTCAAGTACACAGTGAACTTCTTAGAAGCCAAAGAAGGCGATTTGCACAGGATAGAAATCC
CATTCAAATTCCACATGCTGCATTCAGGGCTAGTCCATGGCTTGGCCTTCTGGTTCGATGTTGCTTTCAT
TGGCTCCATAATGACCGTGTGGCTATCCACAGCCCCAACAGAGCCCCTGACCCACTGGTACCAGGTCCGG
TGCCTCTTCCAGTCACCGTTGTTTGCCAAGGCCGGGGACACGCTCTCAGGGACATGTCTGCTTATTGCCA
ACAAAAGACAGAGCTATGACATCAGTATTGTGGCACAGGTGGACCAGACAGGCTCCAAGTCCAGTAACCT
GCTGGATCTAAAGAACCCCTTCTTCAGGTACACAGGTACAACCCCATCACCCCCACCTGGCTCACACTAC
ACGTCTCCCTCGGAGAATATGTGGAACACAGGAAGCACCTATAATCTCAGCAGCGGGGTGGCTGTGGCTG
GAATGCCTACTGCCTACGACCTGAGCAGTGTTATTGCCGGCGGCTCCAGTGTGGGTCACAACAACCTGAT
TCCCTTAGGCTCCTCAGGTGCCCAGGGAGGCGGCGGTAGCTCCAGTGCCCACTATGCAGTCAACAACCAG
TTCACCATGGGTGGCCCTGCCATCTCTATGGCCTCGCCCATGTCCATCCCGACCAACACCATGCACTATG
GGAGTTAG

Translation (585 aa):
MAAAAATAVGPGAGSAGVAGPGGAGPCATVSVFPGARLLTIGDANGEIQRHAEQQALRLEVRAGPDAAGI
ALYSHEDVCVFKCSVSRETECSRVGRQSFIITLGCNSVLIQFATPHDFCSFYNILKTCRGHTLERSVFSE
RTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARK
IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYL
KPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILM
AKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVR
CLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRYTGTTPSPPPGSHY
TSPSENMWNTGSTYNLSSGVAVAGMPTAYDLSSVIAGGSSVGHNNLIPLGSSGAQGGGGSSSAHYAVNNQ
FTMGGPAISMASPMSIPTNTMHYGS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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