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Report for CCDS52881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52881.1 Public Mus musculus 9 Mthfsl 23 108 98 CCDS HistoryNCBI Gene:100039707Re-query CCDS DB by CCDS ID:52881.1Re-query CCDS DB by GeneID:100039707See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52881.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113110.4 ENSMUSP00000108734.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113110.4Link to Ensembl Protein Viewer:ENSMUSP00000108734.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113110Re-query CCDS DB by Protein ID:ENSMUSP00000108734
Original member Current member NCBI NM_001128601.1 NP_001122073.1 Accepted alive Link to Nucleotide Sequence:NM_001128601.1Link to Protein Sequence:NP_001122073.1Re-query CCDS DB by Nucleotide ID:NM_001128601Re-query CCDS DB by Protein ID:NP_001122073Link to BLAST:NP_001122073.1

Chromosomal Locations for CCDS 52881.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 88688753 88688985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88715488 88715749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88719659 88719775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGCGGCGGTCACGGTAAACAGTGCCAAGCGGGGCCTGCGGGCCGAGCTGAAGCAGCGCTTGAGGGCCT
TGAGCGCGGAGGAACGGCTGCGCCAGTCTCTCCTCCTCACGCAGAAGGTGATTGCCCACAATCAGTATCA
GAATTCCAAAAGAATTTCCATCTTTCTGAGCATGCAAGATGAAGTTGAGACGGAAGTAATCATCAAGGAC
ATTTTCAAACAAGGCAAAATCTGCTTCATCCCTCAGTACCAATTCCAGAGCAATCACATGGACATGGTGA
GGTTAACGTCACCTGAAGAAATTGCTTTACTTCCCAAGACATCTTGGAATATTCATCAGCCTGGTGAGGG
AGATGTTCGGGAGGAGGCCTTATCCACTGGTGGACTTGACCTCATCTTCCTTCCTGGCCTCGGGTTTGAC
AAAGATGGCAACCGGCTGGGGCGGGGTAAGGGGTACTATGACACCTACCTGAAGCGCTGTGTACAGCATC
AGGAAGTGAAGCCCTACACCATGGCTTTGGCTTTTAAAGAGCAGATCTGTCCCCAGATCCCAGTGGATGA
GCATGACATGAAGGTAGATGAAGTCCTTTATGAAGATTCCCCAGCATCCTAA

Translation (203 aa):
MAAVTVNSAKRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQDEVETEVIIKD
IFKQGKICFIPQYQFQSNHMDMVRLTSPEEIALLPKTSWNIHQPGEGDVREEALSTGGLDLIFLPGLGFD
KDGNRLGRGKGYYDTYLKRCVQHQEVKPYTMALAFKEQICPQIPVDEHDMKVDEVLYEDSPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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