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Report for CCDS5292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5292.1 Public Homo sapiens 6 SFT2D1 24 110 108 CCDS HistoryNCBI Gene:113402Re-query CCDS DB by CCDS ID:5292.1Re-query CCDS DB by GeneID:113402See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5292.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361731.4 ENSP00000354590.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361731.4Link to Ensembl Protein Viewer:ENSP00000354590.3Re-query CCDS DB by Nucleotide ID:ENST00000361731Re-query CCDS DB by Protein ID:ENSP00000354590
Original member Current member NCBI NM_145169.3 NP_660152.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145169.3Link to Protein Sequence:NP_660152.1Re-query CCDS DB by Nucleotide ID:NM_145169Re-query CCDS DB by Protein ID:NP_660152Link to BLAST:NP_660152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660152.1 159 Q8WV19 159 100% 0 0

Chromosomal Locations for CCDS 5292.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 166320217 166320256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 166322857 166322886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 166324537 166324595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 166326132 166326167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 166328276 166328357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 166329507 166329589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 166330161 166330247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 166342419 166342481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGAGAAGCTGCGGCGAGTCCTGAGCGGCCAGGACGACGAGGAGCAGGGCCTGACTGCGCAGGTCCTGG
ATGCCTCATCCCTTAGTTTCAACACCAGATTGAAATGGTTTGCCATCTGCTTCGTATGTGGCGTTTTCTT
TTCTATTCTTGGAACTGGATTGCTGTGGCTTCCGGGCGGCATAAAGCTTTTTGCAGTGTTTTATACCCTC
GGCAATCTTGCTGCGTTAGCCAGTACATGCTTTTTAATGGGACCTGTGAAGCAACTGAAGAAAATGTTTG
AAGCAACAAGATTGCTTGCAACAATTGTTATGCTTTTGTGTTTCATATTTACCCTGTGTGCTGCTCTTTG
GTGGCATAAGAAGGGACTGGCTGTGTTATTCTGCATATTGCAGTTCTTGTCAATGACCTGGTATAGCCTG
TCGTACATCCCATATGCAAGGGATGCAGTTATTAAATGCTGTTCTTCTCTCCTAAGTTGA

Translation (159 aa):
MEKLRRVLSGQDDEEQGLTAQVLDASSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGGIKLFAVFYTL
GNLAALASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFCILQFLSMTWYSL
SYIPYARDAVIKCCSSLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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