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Report for CCDS53002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53002.1 Under review, update Mus musculus X Rpgr 23 108 98 CCDS HistoryNCBI Gene:19893Re-query CCDS DB by CCDS ID:53002.1Re-query CCDS DB by GeneID:19893See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 53002.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115532.1 ENSMUSP00000111194.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115532.1Link to Ensembl Protein Viewer:ENSMUSP00000111194.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115532Re-query CCDS DB by Protein ID:ENSMUSP00000111194
Original member NCBI NM_001177951.1 NP_001171422.1 Updated not alive Link to Nucleotide Sequence:NM_001177951.1Link to Protein Sequence:NP_001171422.1Re-query CCDS DB by Nucleotide ID:NM_001177951Re-query CCDS DB by Protein ID:NP_001171422
Current member NCBI NM_001177951.2 NP_001171422.2 Pending alive Link to Nucleotide Sequence:NM_001177951.2Link to Protein Sequence:NP_001171422.2Re-query CCDS DB by Nucleotide ID:NM_001177951Re-query CCDS DB by Protein ID:NP_001171422Link to BLAST:NP_001171422.2

Chromosomal Locations for CCDS 53002.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 10160775 10160780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10162602 10162690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10164722 10164779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10166076 10166276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10176003 10176881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10178271 10178336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10181955 10182052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10194818 10194983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10195972 10196154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10198911 10199035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10202010 10202165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10206123 10206281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10208673 10208822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10210599 10210757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10211798 10211860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10212725 10212817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10213529 10213654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10216552 10216693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2919 nt):
ATGCCAAGAGGGTCGCGATGGGGGTCCCAGGGGGTAGGGCAGCACCTTAGGCTCAATCGAGTCGCCCCTG
CTATCTTTCCGAAGCAGGCACAGATTCCGTTCGCAGGCTTCGGCATGGCGGAATCTGAGTCACTGGTGCC
CGATACAGGTGCTGTGTTTACGTTTGGAAAAACTAAATTTGCCGAAAATATTCCTAGCAAATTCTGGTTT
AAAAATGACATACCCATATGTCTTTCATGTGGAGATGAACATACTGCTATTGTTACAGGAAATAATAAAT
TGTACATGTTCGGCAGTAACAACTGGGGTCAGTTAGGATTAGGATCAAAAGCTGCTATCATCAAGCCAAC
ATGTATCAAAGCTCTTAAGCCTGAGAAGGTGAAACTTGCTGCCTGTGGAAGGAACCACACCTTAGTTTCA
ACAGATACTGGTGGCGTATATGCAGCTGGTGGAAATAATGAAGGTCAACTGGGGCTTGGTGACACTGACG
ATAGAGACACCTTTCATCAAATTGTCTTCTTTACACCTGCTGATACCATTAAACAGCTCTCTGCTGGCGC
CAATACATCCGCTGCTCTTACTGAGGATGGAAAACTTTTTATGTGGGGTGACAATTCTGAAGGGCAGATT
GGTCTAGAAGATAAAAGTAATGTATGTATCCCTCATGAAGTGACTGTTGGAAAGCCAATTTCCTGGATCT
CTTGTGGATATTACCATTCAGCTTTTGTAACAATGGATGGGGAGCTCTACACATTTGGAGAACCCGAGAA
TGGGAAGTTGGGCCTTCCCAATGAGCTGCTGATGAATCACAGATCACCCCAGCGTGTGCTGGGCATTCCT
GAGAGGGTCATTCAAGTGGCCTGTGGTGGAGGGCACACTGTGGTTCTCACAGAGAAAGTTGTGTATGCCT
TTGGGCTGGGGCAGTTTGGACAACTGGGCCTTGGCACTTTTCTCTTTGAAACATCAGAACCCAAAATTAT
TGAGCGTATTAAGGATCAGAAAATATGTCATATTTCCTGTGGAGAAAACCATACAGCTTTGATGACAGAA
CTAGGCCTCCTGTATACTTTTGGAGACGGCCGACATGGAAAGTTAGGACTTGGGATGGAGAATTTCACCA
ATCAGTTCTTTCCTACCTTGTGCTCTAACTTTTTGAGATTTGCAGTTCAATTGATTGCCTGTGGTGGATG
TCATATGCTAGTTTTTGCCACTCCACGACTTGGTACAATAGATGAACCTAAATTTGAAGACGTATATGAG
CCTTATATAAGTACAGGTTCTTTTTCCATCAATGACCTCTCCCCAAGAAGTTCACTGAATAGATCTTTAT
CAGCACGTCTGCGGCGAAGAGAGCGGGAGAGACCCCCATGCTCAGCTTCAATGGTGGGAACACTGCCTCC
ATTAGAGGGGACTTCTGCCTCCACTTCAGCTTATTTTTACCCCAGTTCACCCCCCTTCCATTTGTCTGTG
AATAACTACCCAGAGAAAAGCCCCTCTGAATCAATGGAGCCACTGGACTCAGATTATTTTGAAGATAAAA
TGAACAAAGACACAGAGACAGAAAATTCTTCAGCAGTGGATTCAGAAAACTTTGGTGAAACTAATGATAT
CTTAAATATGACACATATGATGACTACGAGTTCCAATGAGAAGTTATTAGATTTTTCACCAATTCAAAAA
CAACAGAATCAAGACACATTTGAGAAAGTGATGGAAAGTACACCGTGCACTGAAAATGAGGATAGTTATG
AATATGAAGAAATGTCAAAAATAAAAGAAGTGACAGTGTACAAACAATATTTAGCAAAAGGGATCTACAT
GATACGACCAGCCGAGATTCTGGAAGCATTTTCAGATGAGGAAGTGGGTAATGGCCTAGACCAGGTGGAG
GAGCCGCGGGTCTTCACTGATGGAAAGGGCTTACAAAGCAAGCAAGTAGGAAAGGAAAGTGATGAAGAAA
TAGTCTCTGAGAAGAAAACTGAGGTGATGGAAGTGGCAGATGTGAAAAAGATTAGAGAAAGTGAAGAGAA
CTCAAAATCAGATTCACTTTTTGATGACTTACCAGATAAAACCATGAATTCTGAGAGTGAAGACAATAAA
GATATTGCTGAGGAAAGGAGAAGCAGTGAGCAGAATATGACCTTTGACAGTGAAACAGAATTGGTAGAAG
AACCAGACAGTTACATGGAATGTGAGAGGCACAGTGAGCAAGACAGTGCTGAGGAGTTGGAGCAGCCCAA
GCTAGTAGAATATAGTAGCGAAGAGAAAGATGAGAAAGATGAGAAAGATGACGATGAAGTGGAGACTGAG
AACTTATGGTACGACAGGAACTGTACTGAGCAAGAAACTGAGAATGTATTCAGAGCAACCAGATTTTTCC
CAAAGTTCGATCTTAAGCATGATCATTTGTCAGGGATACCAGAGGAGCAGGAAGGACCAGAGGATTCAGA
AGGAAATGTAGTAGTGGAGCAAGTAGTACAGGCACAAAAGGAAAATTTGGAATTTGAAGGAGACAGAAAG
GAGGCAAAAGCAGAAGCCCCATCAGATGTCATTACAGAAAAAGAGGCTCCTCAACTTTCAGAAACTGTGA
AACCAGAAGAAGGGGAAATGGATGAGGAAATTAGTATCCTGAATGTAGAAGACACTGTAGAAGAAGAAAG
GAAGGAAGGAGAGAAGGAGATTGTAGAAGAAGGAAGTATACCTGAAACAGAAGGCTCAGAAACTATTGAT
ATTACTGATGAGAAGCTAGATGAAGTCCTTAAAGAGGAAGACAGTGCCAGCCTTCTGCAACGGGCCCTTC
GTGAGTACAATGAAAATCCAAAAGGACACATGTATGATCGTGTAAAGAGCAGCTCTTCAGAAATTCTGGG
AGGTAATGATCCAACAAGTAAAGACATAAAAAAAGCTAAAAAATCCTAG

Translation (972 aa):
MPRGSRWGSQGVGQHLRLNRVAPAIFPKQAQIPFAGFGMAESESLVPDTGAVFTFGKTKFAENIPSKFWF
KNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLGLGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVS
TDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQI
GLEDKSNVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRVLGIP
ERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGLGTFLFETSEPKIIERIKDQKICHISCGENHTALMTE
LGLLYTFGDGRHGKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHMLVFATPRLGTIDEPKFEDVYE
PYISTGSFSINDLSPRSSLNRSLSARLRRRERERPPCSASMVGTLPPLEGTSASTSAYFYPSSPPFHLSV
NNYPEKSPSESMEPLDSDYFEDKMNKDTETENSSAVDSENFGETNDILNMTHMMTTSSNEKLLDFSPIQK
QQNQDTFEKVMESTPCTENEDSYEYEEMSKIKEVTVYKQYLAKGIYMIRPAEILEAFSDEEVGNGLDQVE
EPRVFTDGKGLQSKQVGKESDEEIVSEKKTEVMEVADVKKIRESEENSKSDSLFDDLPDKTMNSESEDNK
DIAEERRSSEQNMTFDSETELVEEPDSYMECERHSEQDSAEELEQPKLVEYSSEEKDEKDEKDDDEVETE
NLWYDRNCTEQETENVFRATRFFPKFDLKHDHLSGIPEEQEGPEDSEGNVVVEQVVQAQKENLEFEGDRK
EAKAEAPSDVITEKEAPQLSETVKPEEGEMDEEISILNVEDTVEEERKEGEKEIVEEGSIPETEGSETID
ITDEKLDEVLKEEDSASLLQRALREYNENPKGHMYDRVKSSSSEILGGNDPTSKDIKKAKKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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