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Report for CCDS53013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53013.1 Public Mus musculus X Rbm10 23 108 98 CCDS HistoryNCBI Gene:236732Re-query CCDS DB by CCDS ID:53013.1Re-query CCDS DB by GeneID:236732See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115375.7 ENSMUSP00000111033.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115375.7Link to Ensembl Protein Viewer:ENSMUSP00000111033.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115375Re-query CCDS DB by Protein ID:ENSMUSP00000111033
Original member Current member EBI ENSMUST00000177738.7 ENSMUSP00000136209.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177738.7Link to Ensembl Protein Viewer:ENSMUSP00000136209.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177738Re-query CCDS DB by Protein ID:ENSMUSP00000136209
Original member Current member NCBI NM_001167775.2 NP_001161247.1 Accepted alive Link to Nucleotide Sequence:NM_001167775.2Link to Protein Sequence:NP_001161247.1Re-query CCDS DB by Nucleotide ID:NM_001167775Re-query CCDS DB by Protein ID:NP_001161247Link to BLAST:NP_001161247.1
Original member Current member NCBI NM_001358903.1 NP_001345832.1 Accepted alive Link to Nucleotide Sequence:NM_001358903.1Link to Protein Sequence:NP_001345832.1Re-query CCDS DB by Nucleotide ID:NM_001358903Re-query CCDS DB by Protein ID:NP_001345832Link to BLAST:NP_001345832.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161247.1 929 Q99KG3-3 929 100% 0 0
NP_001345832.1 929 Q99KG3-3 929 100% 0 0

Chromosomal Locations for CCDS 53013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20620098 20620114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20635731 20635914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20637426 20637656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20639433 20639502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20641183 20641256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20642744 20642830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20644672 20644732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20644865 20645041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20645437 20645594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20645769 20645866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20645959 20646046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20647322 20647505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20647611 20647750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20647866 20647986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20648082 20648173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20648257 20648421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20649144 20649293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20649388 20649453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20649532 20649720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20649801 20649875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20650163 20650269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20650347 20650476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20650559 20650684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGGAGTATGAAAGACGAGGTGGTCGTGGTGACAGGACTGGCCGCTATGGAGCCACTGATCGTTCACAGG
ATGATAGTGGAGAGAACCGCAGCCGGGACCATGATTATAGAGACATGGACTACCGCTCATACCCACGAGA
GTATGGCAGTCAGGAGGGCAAGCATGAGTATGACGACTCATCTGAAGAGCAAAGTGCAGAGGATTCCTAC
GAGGCCTCCCCGGGCTCCGAGACTCAGCGTAGGCGGCGGCGGCGGCACAGGCACAGTCCCACTGGCCCGC
CAGGCTTCCCCAGAGACGGCGACTATCGGGACCAGGACTATCGGACCGAGCAAGGGGAGGAGGAGGAGGA
GGAGGATGAGGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCC
ACTGAGGATGACATCCGTGGACAGCTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCGGCTGATGCGGA
ACAAATCCTCAGGTCAGAGCCGGGGCTTCGCCTTCGTCGAGTTTAGTCACTTGCAGGACGCTACACGATG
GATGGAAGCCAATCAGCACTCCCTCAACATCCTGGGCCAGAAGGTATCCATGCATTACAGCGACCCCAAG
CCCAAGATCAATGAGGACTGGCTGTGTAATAAGTGTGGTGTCCAGAACTTCAAGCGCCGAGAGAAGTGCT
TCAAATGTGGTGTGCCCAAATCAGAGGCAGAGCAGAAGCTGCCCCTGGGCACTCGGCTGGATCAGCAGGC
ACTGCCACTGGGTGGGCGGGAGCTAAGCCAGGGCTTACTCCCACTGCCGCAGCCCTACCAGGCCCAGGGA
GTGCTAACCTCACAAGCCCTGTCACAGGGCTCAGAGCCAAGCTCCGAGAACGCCAATGACACCATTATTT
TACGAAACCTGAACCCACACAGCACTATGGACTCCATCCTCGGGGCCCTAGCACCCTATGCGGTGCTGTC
CTCTTCCAATGTGCGTGTTATCAAGGACAAACAGACTCAGCTGAACCGAGGCTTCGCCTTCATCCAGCTC
TCCACCATCGAAGCAGCCCAGCTGCTACAGATCCTGCAGGCCCTGCACCCTCCGCTCACCATCGATGGCA
AGACCATCAACGTGGAGTTTGCCAAGGGTTCTAAGAGGGATATGGCCTCCAATGAAGGCAGTCGCATCAA
TGCTGCCTCTGTGGCCAGTACTGCCATTGCTGCTGCCCAGTGGGCAATCTCACAGGCCTCCCAGGGTGGA
GAGAGTGCCTGGGCTGCCCCCGAGGAGCCACCAGTTGACTACAGCTACTACCAACAGGATGAGGGCTATG
GCAGCAGCCAGGGAACAGATTCCCTCTATGCCCATGGCTACCTGAAGAACAGCAAGGGCCCTGGCATGAC
TGGGACCAAAGGGGACCCAGCTGGAACAGGTCCTGAGGCCTCCCTTGAGGCTGGAGCAGACTCTGTGTCA
CTGCAGGCTTTCTCTCGAGCCCAGCCTGGTGCTGCCCCTGGGCTCTATCAGCAATCAGCTGAGGGGAGCA
GTGGCCAGAGCACTGCTACCAACAGCCAGTCATACACCATCATATCACCTGCTGTGCTCAAGGCTGAGCT
TCAGAGCCCTACTCAGCCCAGCAGCTCTGCCTTCCCACCGGCTACCAGTCCCACTGCCCCCGAGGCCTAC
AGCCAGTACCCTGTTCCTGATGTCTCTACTTACCAATATGATGAGACATCTGGCTACTACTATGACCCCC
AGACTGGTCTATACTATGATCCCAATTCCCAGTATTACTACAATGCTCAGAGTCAGCAGTACCTATACTG
GGATGGGGAGCGGCGGACCTACATACCTGCCTTGGAGCAGTCTGCTGATGGACATAAGGACACGGGGGCA
TCATCAAAGGAGGGAAAAGAGAAGAAAGAGAAGCATAAGACAAAGACAGCCCAACAGATTGCCAAGGACA
TGGAGCGGTGGGCACGCAGTCTCAATAAGCAAAAAGAAAACTTCAAAAACAGCTTCCAGCCTATTAGTGC
TCTACGAGATGATGAAAGGCGGGAATCGGCCACTGCAGATGCAGGCTATGCCATCCTTGAGAAGAAGGGA
GCGCTAGCTGAAAGACAGCACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATGACCGCCCAAGCCCAC
CTCGAGGGCTGGTGGCAGCCTATAGTGGGGAGAGTGACAGTGAGGAGGAACAGGAGCGAGGAGGTCCTGA
ACGGGAAGAAAAGCTCACAGACTGGCAGAAGCTAGCCTGTCTGCTCTGCCGCCGCCAGTTTCCCAGCAAG
GAGGCACTCATCCGGCACCAGCAGCTCTCTGGGCTCCACAAGCAAAACCTTGAGATTCATCGGCGAGCCC
ACTTGTCAGAAAACGAATTGGAAGCACTAGAGAAAAATGACATGGAGCAAATGAAGTATCGAGACCGTGC
AGCTGAACGCAGGGAGAAGTATGGTATCCCTGAGCCACCAGAGCCCAAACGGAGGAAGTATGGTGGCATA
TCTACAGCCTCTGTGGACTTTGAACAACCCACTCGGGATGGATTAGGCAGTGACAACATTGGCAGTCGAA
TGCTCCAGGCCATGGGCTGGAAAGAAGGCAGTGGTCTGGGCCGCAAGAAACAGGGCATTGTGACACCCAT
TGAGGCCCAAACACGAGTTCGAGGTTCTGGCCTGGGTGCCAGGGGCAGTTCCTATGGGGTCACCTCAACA
GAATCCTATAAGGAGACACTGCACAAGACAATGGTGACCCGCTTCAATGAGGCCCAGTGA

Translation (929 aa):
MEYERRGGRGDRTGRYGATDRSQDDSGENRSRDHDYRDMDYRSYPREYGSQEGKHEYDDSSEEQSAEDSY
EASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEDEEEEEEKASNIVMLRMLPQAA
TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK
PKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQALPLGGRELSQGLLPLPQPYQAQG
VLTSQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQL
STIEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRINAASVASTAIAAAQWAISQASQGG
ESAWAAPEEPPVDYSYYQQDEGYGSSQGTDSLYAHGYLKNSKGPGMTGTKGDPAGTGPEASLEAGADSVS
LQAFSRAQPGAAPGLYQQSAEGSSGQSTATNSQSYTIISPAVLKAELQSPTQPSSSAFPPATSPTAPEAY
SQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYIPALEQSADGHKDTGA
SSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISALRDDERRESATADAGYAILEKKG
ALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSK
EALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGGI
STASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTST
ESYKETLHKTMVTRFNEAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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