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Report for CCDS53169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53169.1 Public Mus musculus X Atp7a 23 108 98 CCDS HistoryNCBI Gene:11977Re-query CCDS DB by CCDS ID:53169.1Re-query CCDS DB by GeneID:11977See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055941.6 ENSMUSP00000058840.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055941.6Link to Ensembl Protein Viewer:ENSMUSP00000058840.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055941Re-query CCDS DB by Protein ID:ENSMUSP00000058840
Original member Current member NCBI NM_001109757.2 NP_001103227.1 Accepted alive Link to Nucleotide Sequence:NM_001109757.2Link to Protein Sequence:NP_001103227.1Re-query CCDS DB by Nucleotide ID:NM_001109757Re-query CCDS DB by Protein ID:NP_001103227Link to BLAST:NP_001103227.1

Chromosomal Locations for CCDS 53169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 106069788 106069907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106085114 106085603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106086089 106086814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106088335 106088517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106092084 106092247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106094853 106095014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106096777 106096853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106097390 106097615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106098786 106099019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106100527 106100618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106101860 106101987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106102347 106102501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106102712 106102846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106105147 106105341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106107184 106107366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106109761 106109977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106115090 106115236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106118252 106118394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106120235 106120438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106121590 106121707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106123343 106123445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106124339 106124615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4479 nt):
ATGGAGCCAAGTGTGGATGCAAATTCAATTACTATCACTGTTGAGGGAATGACATGTATTTCCTGTGTCC
GGACCATTGAACAGCAGATTGGGAAAGTGAATGGTGTCCATCACATTAAAGTTTCACTAGAAGAAAAGAG
TGCAACCATTATTTATGACCCTAAACTTCAGACTCCAAAGACCCTCCAAGAAGCTATCGATGACATGGGC
TTTGATGCTCTTCTCCACAATGCTAACCCCCTCCCTGTCTTAACCAATACCGTGTTCCTGACTGTTACTG
CTCCACTGACTCTGCCTTGGGACCATATCCAAAGTACATTGCTCAAGACCAAGGGTGTGACTGGTGTTAA
GATTTCCCCTCAGCAAAGAAGTGCAGTAGTCACCATAATTCCATCTGTGGTGAGTGCCAGTCAGATTGTG
GAGCTGGTCCCAGACCTCAGTTTAGACATGGGAACTCAGGAGAAAAAGTCAGGAGCTTGTGAAGAGCACA
GCACGCCTCAGGCAGGGGAAGTCATGCTGAAGATGAAAGTGGAAGGGATGACCTGCCATTCATGTACTAG
CACCATTGAAGGAAAAGTTGGAAAGCTGCAAGGTGTTCAGCGCATTAAAGTGTCCCTAGACAACCAAGAA
GCTACTATTGTTTTTCAACCTCATCTCATCACAGCAGAGGAAATAAAGAAGCAGATTGAAGCCGTGGGTT
TCCCAGCCTTCATAAAAAAGCAGCCGAAGTACCTCAAATTGGGAGCCATTGATGTTGAGCGCCTGAAGAA
CACACCGGTCAAATCTTCAGAAGGATCTCAGCAAAAGAGCCCATCATATCCCAGTGACTCCACAACCATG
TTCACCATAGAGGGCATGCATTGTAAATCGTGTGTGTCCAATATTGAAAGTGCTTTATCTACACTCCAGT
ATGTAAGCAGTATAGTAGTTTCTTTAGAGAATAGGTCAGCCATTGTAAAGTACAATGCAAGCTTAGTCAC
TCCAGAAATGCTGAGAAAGGCAATAGAGGCCATTTCACCGGGGCAATACAGAGTTAGTATTGCAAGTGAA
GTTGAAAGTACCGCCAGCTCTCCCTCCAGCTCATCTCTTCAGAAGATGCCTTTGAACATAGTTAGCCAGC
CTCTGACCCAAGAAGCTGTGATAAACATAAATGGCATGACTTGTAATTCTTGTGTGCAGTCTATAGAGGG
TGTAATATCAAAAAAGCCAGGTGTAAAATCCATCCACGTGTCCCTCGCAAACAGCACAGGGACTATTGAA
TTTGATCCTCTACTAACCTCTCCAGAAACCTTGCGAGAAGCAATTGAAGACATGGGATTTGATGCTGCCT
TGCCAGCAGACATGAAAGAGCCACTGGTAGTGATAGCTCAGCCCTCACTGGAAACACCTCTTTTGCCCTC
AAGTAATGAGCTAGAAAATGTGATGACGTCAGTTCAGAACAAGTGTTACATACAGGTCTCTGGGATGACC
TGTGCTTCTTGTGTAGCAAACATTGAACGCAATTTAAGACGAGAAGAAGGAATATATTCTGTACTTGTTG
CCCTAATGGCTGGCAAGGCAGAAGTAAGATATAACCCAGCTGTTATCCAACCCCGAGTGATAGCAGAGTT
TATTCGAGAGCTTGGATTTGGAGCTATGGTGATGGAAAACGCTGGGGAAGGCAACGGCATCTTGGAACTT
GTTGTGAGAGGAATGACGTGTGCTTCCTGTGTCCATAAAATTGAATCAACACTCACAAAACACAAAGGGA
TCTTCTACTGCTCTGTGGCCCTGGCAACTAACAAAGCACATATTAAATATGATCCAGAAATTATTGGTCC
CAGAGATATTATCCATACCATCGGAAGCTTAGGCTTTGAAGCTTCTTTGGTCAAGAAAGATCGATCAGCC
AACCACTTAGATCATAAACGAGAAATAAAACAATGGAGAGGGTCTTTCCTTGTGAGCCTGTTTTTCTGTA
TCCCTGTAATGGGACTGATGGTCTATATGATGGTTATGGATCACCACCTTGCAACTCTTCACCATAATCA
GAACATGAGTAATGAAGAAATGATCAACATGCATTCTGCTATGTTTCTGGAGCGTCAGATCCTGCCAGGA
CTGTCCATTATGAATTTGTTGTCCCTTTTATTGTGTCTACCTGTACAGTTTTGTGGCGGCTGGTACTTCT
ACATTCAGGCTTACAAAGCACTGAAGCATAAGACAGCAAACATGGATGTGCTGATTGTGCTGGCAACCAC
CATCGCATTTGCCTACTCTCTGGTTATTCTTCTGGTTGCAATGTTTGAGAGAGCCAAAGTGAACCCCATT
ACCTTCTTTGATACACCTCCTATGCTGTTTGTGTTTATTGCACTAGGACGATGGCTGGAACATATAGCGA
AGGGCAAAACCTCCGAGGCTCTTGCAAAGCTAATTTCATTACAAGCAACTGAAGCCACTATTGTAACTCT
GAACTCTGAAAATCTCCTCCTGAGTGAAGAACAAGTGGATGTGGAACTTGTACAACGTGGAGATATCATT
AAGGTTGTTCCAGGAGGCAAATTTCCAGTGGATGGCCGTGTTATTGAAGGACATTCTATGGTGGACGAGT
CCCTCATCACAGGGGAGGCAATGCCTGTGGCTAAGAAACCTGGCAGCACGGTGATTGCAGGTTCCATTAA
CCAGAATGGATCTCTCCTCATCCGAGCAACACATGTGGGAGCAGATACAACCCTTTCTCAGATCGTCAAA
CTTGTGGAGGAGGCACAGACATCAAAGGCTCCTATCCAGCAGTTTGCAGACAAACTCAGTGGCTACTTTG
TTCCTTTCATCGTCTTGGTTTCCATTGTTACCCTCTTGGTGTGGATTATAATTGGATTTCAAAATTTTGA
AATTGTGGAAACCTACTTTCCCGGCTATAATAGAAGCATCTCCCGAACAGAAACCATAATACGCTTTGCT
TTCCAAGCCTCTATCACGGTTCTGTGTATCGCATGTCCCTGTTCACTGGGACTAGCCACTCCAACTGCTG
TGATGGTGGGCACAGGAGTAGGTGCTCAGAATGGCATACTTATCAAAGGTGGGGAGCCACTGGAAATGGC
TCATAAGGTAAAGGTAGTGGTATTTGATAAGACTGGAACCATCACCCATGGAACCCCAGTAGTGAATCAA
GTGAAGGTTCTCGTGGAAAGTAACAAGATATCACGCAATAAGATCCTGGCCATTGTGGGGACTGCAGAAA
GTAACAGTGAACATCCTTTAGGAGCAGCTGTAACCAAATATTGCAAAAAGGAGCTGGACACTGAAACCCT
GGGTACCTGTACAGATTTCCAGGTTGTACCAGGCTGTGGTATTAGCTGTAAAGTCACCAATATTGAAGGT
TTGCTACATAAGAGTAACTTGAAGATAGAAGAAAATAACATTAAAAATGCATCCCTGGTTCAAATTGATG
CAATTAATGAACAGTCATCAACTTCATCTTCTATGATTATTGATGCTCATCTCTCAAATGCTGTTAATAC
TCAGCAGTACAAAGTCCTCATTGGTAACCGGGAATGGATGATTAGAAATGGTCTTGTCATAAGTAATGAT
GTAGATGAATCTATGATTGAACATGAAAGAAGAGGTCGGACTGCTGTCTTGGTGACAATCGATGATGAGC
TGTGTGGCTTGATTGCTATTGCTGATACTGTGAAACCTGAGGCCGAGTTGGCTGTACACATTCTGAAATC
TATGGGTTTAGAAGTAGTTCTGATGACTGGAGACAACAGTAAAACTGCTCGGTCTATTGCTTCTCAGGTT
GGCATTACTAAGGTGTTTGCTGAAGTTCTACCTTCCCACAAAGTTGCTAAGGTGAAGCAGCTCCAAGAGG
AGGGCAAACGTGTAGCAATGGTAGGAGATGGAATCAATGACTCCCCAGCTCTGGCAATGGCAAACGTTGG
AATTGCCATAGGCACAGGCACAGATGTAGCCATTGAAGCAGCTGATGTGGTTTTGATAAGGAATGACCTT
CTGGATGTTGTGGCAAGTATTGACTTGTCAAGGAAAACAGTCAAGAGGATTCGAATCAATTTTGTCTTTG
CTCTAATTTATAATCTGGTTGGAATTCCCATCGCTGCTGGAGTTTTCCTGCCCATCGGTTTGGTTTTACA
ACCCTGGATGGGATCCGCAGCAATGGCCGCTTCATCTGTCTCTGTAGTCCTTTCTTCCCTTTTCCTCAAG
CTTTACAGGAAACCTACGTATGACAATTATGAGTTGCATCCCCGGAGCCACACAGGACAGAGGAGTCCTT
CAGAAATCAGTGTTCACGTTGGAATAGATGACACCTCAAGAAATTCTCCAAGGCTGGGTTTGCTGGACCG
GATTGTCAACTATAGCAGAGCCTCCATAAATTCACTGCTGTCTGACAAGCGCTCCCTGAACAGCGTTGTT
ACTAGTGAACCTGACAAGCACTCGCTTCTGGTGGGCGACTTCCGGGAAGATGATGACACCACACTGTAA

Translation (1492 aa):
MEPSVDANSITITVEGMTCISCVRTIEQQIGKVNGVHHIKVSLEEKSATIIYDPKLQTPKTLQEAIDDMG
FDALLHNANPLPVLTNTVFLTVTAPLTLPWDHIQSTLLKTKGVTGVKISPQQRSAVVTIIPSVVSASQIV
ELVPDLSLDMGTQEKKSGACEEHSTPQAGEVMLKMKVEGMTCHSCTSTIEGKVGKLQGVQRIKVSLDNQE
ATIVFQPHLITAEEIKKQIEAVGFPAFIKKQPKYLKLGAIDVERLKNTPVKSSEGSQQKSPSYPSDSTTM
FTIEGMHCKSCVSNIESALSTLQYVSSIVVSLENRSAIVKYNASLVTPEMLRKAIEAISPGQYRVSIASE
VESTASSPSSSSLQKMPLNIVSQPLTQEAVININGMTCNSCVQSIEGVISKKPGVKSIHVSLANSTGTIE
FDPLLTSPETLREAIEDMGFDAALPADMKEPLVVIAQPSLETPLLPSSNELENVMTSVQNKCYIQVSGMT
CASCVANIERNLRREEGIYSVLVALMAGKAEVRYNPAVIQPRVIAEFIRELGFGAMVMENAGEGNGILEL
VVRGMTCASCVHKIESTLTKHKGIFYCSVALATNKAHIKYDPEIIGPRDIIHTIGSLGFEASLVKKDRSA
NHLDHKREIKQWRGSFLVSLFFCIPVMGLMVYMMVMDHHLATLHHNQNMSNEEMINMHSAMFLERQILPG
LSIMNLLSLLLCLPVQFCGGWYFYIQAYKALKHKTANMDVLIVLATTIAFAYSLVILLVAMFERAKVNPI
TFFDTPPMLFVFIALGRWLEHIAKGKTSEALAKLISLQATEATIVTLNSENLLLSEEQVDVELVQRGDII
KVVPGGKFPVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLIRATHVGADTTLSQIVK
LVEEAQTSKAPIQQFADKLSGYFVPFIVLVSIVTLLVWIIIGFQNFEIVETYFPGYNRSISRTETIIRFA
FQASITVLCIACPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQ
VKVLVESNKISRNKILAIVGTAESNSEHPLGAAVTKYCKKELDTETLGTCTDFQVVPGCGISCKVTNIEG
LLHKSNLKIEENNIKNASLVQIDAINEQSSTSSSMIIDAHLSNAVNTQQYKVLIGNREWMIRNGLVISND
VDESMIEHERRGRTAVLVTIDDELCGLIAIADTVKPEAELAVHILKSMGLEVVLMTGDNSKTARSIASQV
GITKVFAEVLPSHKVAKVKQLQEEGKRVAMVGDGINDSPALAMANVGIAIGTGTDVAIEAADVVLIRNDL
LDVVASIDLSRKTVKRIRINFVFALIYNLVGIPIAAGVFLPIGLVLQPWMGSAAMAASSVSVVLSSLFLK
LYRKPTYDNYELHPRSHTGQRSPSEISVHVGIDDTSRNSPRLGLLDRIVNYSRASINSLLSDKRSLNSVV
TSEPDKHSLLVGDFREDDDTTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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