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Report for CCDS53219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53219.1 Public Mus musculus X Vcf2 23 108 98 CCDS HistoryNCBI Gene:382245Re-query CCDS DB by CCDS ID:53219.1Re-query CCDS DB by GeneID:382245See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163233.1 ENSMUSP00000132541.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163233.1Link to Ensembl Protein Viewer:ENSMUSP00000132541.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163233Re-query CCDS DB by Protein ID:ENSMUSP00000132541
Original member Current member NCBI NM_001164686.1 NP_001158158.1 Accepted alive Link to Nucleotide Sequence:NM_001164686.1Link to Protein Sequence:NP_001158158.1Re-query CCDS DB by Nucleotide ID:NM_001164686Re-query CCDS DB by Protein ID:NP_001158158Link to BLAST:NP_001158158.1

Chromosomal Locations for CCDS 53219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 150409364 150409600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150420342 150420441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150440767 150440801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGATGATCCTCCGAAGATGGACGATCCTCCGATGAAAAGAAGACCAGATGATAATGAGGATGACAACT
ACCGTCCCCCTCGTTCGAAGAGGATTAAGAAGGACCAGGACATACAGGAACATCATGCTATAGAGTCGAC
AAGCAGTGATAATGAAAGGAACCAAGGCAGCATCAATAACCCCAATCGTGAGAGAGTACCAGAAAGCAGC
TTAAACCCGAGTACTGCTGAACTAGACTCCAATATCCCTGGGTTCTCCCAAGAGGAGGATTATGAAGTGT
GCCAAGACCAAGATCCTTACTCACATATTAACAACATCTTGAAGGAGGCTCATTTCTACAGCCTCCAGCA
GAGAGGACACTCTCCGACTTGA

Translation (123 aa):
MDDPPKMDDPPMKRRPDDNEDDNYRPPRSKRIKKDQDIQEHHAIESTSSDNERNQGSINNPNRERVPESS
LNPSTAELDSNIPGFSQEEDYEVCQDQDPYSHINNILKEAHFYSLQQRGHSPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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