NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, January 28, 2025, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS53222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53222.1 Public Mus musculus X Tsr2 23 108 98 CCDS HistoryNCBI Gene:69499Re-query CCDS DB by CCDS ID:53222.1Re-query CCDS DB by GeneID:69499See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53222.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026295.9 ENSMUSP00000026295.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026295.9Link to Ensembl Protein Viewer:ENSMUSP00000026295.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026295Re-query CCDS DB by Protein ID:ENSMUSP00000026295
Original member Current member NCBI NM_001164578.1 NP_001158050.1 Accepted alive Link to Nucleotide Sequence:NM_001164578.1Link to Protein Sequence:NP_001158050.1Re-query CCDS DB by Nucleotide ID:NM_001164578Re-query CCDS DB by Protein ID:NP_001158050Link to BLAST:NP_001158050.1

Chromosomal Locations for CCDS 53222.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 151090280 151090414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151090596 151090781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151091676 151091767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151096165 151096255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151096429 151096512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGATGGCGGGCGCCGCTGAAGATGTGCGTGTGCTCTTCGGAGCTGCAGTCCGAGCTGCGCTGGAGGCTT
GGCCTGCTTTACAGATCGCTGTGGAGAATGGCTTCGGGGGCGTGCACAGCCAGGAGAAGGCCGAGTGGCT
AGGGGGTGCAGTGGAGGATTACTTCATCGCCAATGCTGACTTGGAGCTGGAAGAGATAGAAGATTTTCTT
GGGGAGCTGATGACCACTGAGTTTGATACAGTTGTGGAAGATGGGAGTCTGCCCCAGGTGAGCCAACAGC
TACAGACCATGTTCCACCACTTCCAGAAGGGTGATGGGGCTGCTCTTCAGGAGATGACCTCTCAGATCAA
CCAAAAAAAGTGCAAAGTCACGGCTACCCCACTTATGACAGCCAAAGAAACTGATGTGGCTGAAGATGAT
GTGGACAGCGTGGAAGAAATGGAGGTGAAAGAGGTGACAGCTACTAATGATGGGGCCACAACTGACGAGG
TCTGCCCACAGCCTCAACCCTCTGATCCAGACACCCAGACTATTAAGGAAGAGGATATAGTTGAAGACGG
TTGGACCATTGTCCGGAGAAAGAAATGA

Translation (195 aa):
MMAGAAEDVRVLFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANADLELEEIEDFL
GELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKKCKVTATPLMTAKETDVAEDD
VDSVEEMEVKEVTATNDGATTDEVCPQPQPSDPDTQTIKEEDIVEDGWTIVRRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH