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Report for CCDS53402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53402.1 Public Homo sapiens 1 NIT1 24 110 108 CCDS HistoryNCBI Gene:4817Re-query CCDS DB by CCDS ID:53402.1Re-query CCDS DB by GeneID:4817See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53402.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368007.8 ENSP00000356986.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368007.8Link to Ensembl Protein Viewer:ENSP00000356986.4Re-query CCDS DB by Nucleotide ID:ENST00000368007Re-query CCDS DB by Protein ID:ENSP00000356986
Original member Current member NCBI NM_001185093.2 NP_001172022.1 Accepted alive Link to Nucleotide Sequence:NM_001185093.2Link to Protein Sequence:NP_001172022.1Re-query CCDS DB by Nucleotide ID:NM_001185093Re-query CCDS DB by Protein ID:NP_001172022Link to BLAST:NP_001172022.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001172022.1 312 Q86X76-4 312 100% 0 0

Chromosomal Locations for CCDS 53402.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161118499 161118551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161119134 161119388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161119509 161119612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161119819 161119952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161120107 161120232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161120499 161120765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGACTTTTGGACTGCGGAAACGTTTGTCAGAGGAAAGAGGCTTCAGTTTAATGCCCAGAGCCATGGCTA
TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGCTGTGTGCCAGGTAACATCGACGCCAGACAAGCAACA
GAACTTTAAAACATGTGCTGAGCTGGTTCGAGAGGCTGCCAGACTGGGTGCCTGCCTGGCTTTCCTGCCT
GAGGCATTTGACTTCATTGCACGGGACCCTGCAGAGACGCTACACCTGTCTGAACCACTGGGTGGGAAAC
TTTTGGAAGAATACACCCAGCTTGCCAGGGAATGTGGACTCTGGCTGTCCTTGGGTGGTTTCCATGAGCG
TGGCCAAGACTGGGAGCAGACTCAGAAAATCTACAATTGTCACGTGCTGCTGAACAGCAAAGGGGCAGTA
GTGGCCACTTACAGGAAGACACATCTGTGTGACGTAGAGATTCCAGGGCAGGGGCCTATGTGTGAAAGCA
ACTCTACCATGCCTGGGCCCAGTCTTGAGTCACCTGTCAGCACACCAGCAGGCAAGATTGGTCTAGCTGT
CTGCTATGACATGCGGTTCCCTGAACTCTCTCTGGCATTGGCTCAAGCTGGAGCAGAGATACTTACCTAT
CCTTCAGCTTTTGGATCCATTACAGGCCCAGCCCACTGGGAGGTGTTGCTGCGGGCCCGTGCTATCGAAA
CCCAGTGCTATGTAGTGGCAGCAGCACAGTGTGGACGCCACCATGAGAAGAGAGCAAGTTATGGCCACAG
CATGGTGGTAGACCCCTGGGGAACAGTGGTGGCCCGCTGCTCTGAGGGGCCAGGCCTCTGCCTTGCCCGA
ATAGACCTCAACTATCTGCGACAGTTGCGCCGACACCTGCCTGTGTTCCAGCACCGCAGGCCTGACCTCT
ATGGCAATCTGGGTCACCCACTGTCTTAA

Translation (312 aa):
MTFGLRKRLSEERGFSLMPRAMAISSSSCELPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLP
EAFDFIARDPAETLHLSEPLGGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAV
VATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALAQAGAEILTY
PSAFGSITGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLAR
IDLNYLRQLRRHLPVFQHRRPDLYGNLGHPLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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