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Report for CCDS53419.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53419.2 Public Homo sapiens 1 FCRLA 24 110 108 CCDS HistoryNCBI Gene:84824Re-query CCDS DB by CCDS ID:53419.2Re-query CCDS DB by GeneID:84824See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53419.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367957.7 ENSP00000356934.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367957.7Link to Ensembl Protein Viewer:ENSP00000356934.3Re-query CCDS DB by Nucleotide ID:ENST00000367957Re-query CCDS DB by Protein ID:ENSP00000356934
Original member Current member NCBI NM_001184872.2 NP_001171801.2 Accepted alive Link to Nucleotide Sequence:NM_001184872.2Link to Protein Sequence:NP_001171801.2Re-query CCDS DB by Nucleotide ID:NM_001184872Re-query CCDS DB by Protein ID:NP_001171801Link to BLAST:NP_001171801.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171801.2 219 Q7L513-5 219 100% 0 0

Chromosomal Locations for CCDS 53419.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161707265 161707343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161711934 161712218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161713085 161713380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGAAGCTGGGCTGTGTCCTCATGGCCTGGGCCCTCTACCTTTCCCTTGGTGTGCTCTGGGTGGCCCAGA
TGCTACTGGAACTGTTTCCAGCGCCAATTCTCAGAGCTGTACCCTCAGCTGAACCCCAAGCAGGAAGCCC
CATGACCCTGAGTTGTCAGACAAAGTTGCCCCTGCAGAGGTCAGCTGCCCGCCTCCTCTTCTCCTTCTAC
AAGGATGGAAGGATAGTGCAAAGCAGGGGGCTCTCCTCAGAATTCCAGATCCCCACAGCTTCAGAAGATC
ACTCCGGGTCATACTGGTGTGAGGCAGCCACTGAGGACAACCAAGTTTGGAAACAGAGCCCCCAGCTAGA
GATCAGAGTGCAGGGTGCTTCCAGCTCTGCTGCACCTCCCACATTGAATCCAGCTCCTCAGAAATCAGCT
GCTCCAGGAACTGCTCCTGAGGAGGCCCCTGGGCCTCTGCCTCCGCCGCCAACCCCATCTTCTGAGGATC
CAGGCTTTTCTTCTCCTCTGGGGATGCCAGATCCTCATCTGTATCACCAGATGGGCCTTCTTCTCAAACA
CATGCAGGATGTGAGAGTCCTCCTCGGTCACCTGCTCATGGAGTTGAGGGAATTATCTGGCCACCGGAAG
CCTGGGACCACAAAGGCTACTGCTGAATAG

Translation (219 aa):
MKLGCVLMAWALYLSLGVLWVAQMLLELFPAPILRAVPSAEPQAGSPMTLSCQTKLPLQRSAARLLFSFY
KDGRIVQSRGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQSPQLEIRVQGASSSAAPPTLNPAPQKSA
APGTAPEEAPGPLPPPPTPSSEDPGFSSPLGMPDPHLYHQMGLLLKHMQDVRVLLGHLLMELRELSGHRK
PGTTKATAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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