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Report for CCDS53456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53456.1 Public Homo sapiens 1 NAV1 24 110 108 CCDS HistoryNCBI Gene:89796Re-query CCDS DB by CCDS ID:53456.1Re-query CCDS DB by GeneID:89796See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53456.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367295.5 ENSP00000356264.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367295.5Link to Ensembl Protein Viewer:ENSP00000356264.1Re-query CCDS DB by Nucleotide ID:ENST00000367295Re-query CCDS DB by Protein ID:ENSP00000356264
Original member Current member NCBI NM_001167738.2 NP_001161210.1 Accepted alive Link to Nucleotide Sequence:NM_001167738.2Link to Protein Sequence:NP_001161210.1Re-query CCDS DB by Nucleotide ID:NM_001167738Re-query CCDS DB by Protein ID:NP_001161210Link to BLAST:NP_001161210.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161210.1 1483 Q8NEY1-5 1483 100% 0 0

Chromosomal Locations for CCDS 53456.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201740024 201740076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201780421 201780559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201781012 201781309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201782176 201782869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201783406 201783852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201785310 201785351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201786429 201786577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201788468 201788638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201789740 201789792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201790554 201790577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201790689 201790766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201793792 201793875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201794466 201794577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201803593 201803714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201807953 201808149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201808418 201808610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201808703 201808871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201809164 201809261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201809442 201809537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201809946 201810105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201810523 201810758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201811603 201811757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201811903 201811974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201812465 201812661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201813140 201813258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201817088 201817285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201819837 201819932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4452 nt):
ATGCTTCATCTGCCCCTGCCCAGATCCGGAAGAACGGTGAATTTCCCCCGCAGCTGGGATGAAAGCAGCT
CCATCAGTAGTGGACTCAGCGATGCCTCAGACAATCTCAGTTCAGAAGAATTCAATGCCAGCTCCTCACT
CAACTCCCTCCCAAGTACTCCCACTGCTTCTCGCAGGAACTCAACAATAGTGCTACGCACAGACTCAGAG
AAGCGCTCACTGGCAGAAAGTGGGCTGAGCTGGTTTAGTGAATCAGAGGAGAAAGCCCCTAAAAAACTGG
AGTACGACAGTGGTAGCCTGAAGATGGAACCTGGGACTTCTAAGTGGCGGAGGGAGCGGCCTGAGAGCTG
TGATGATTCATCCAAGGGTGGAGAACTGAAAAAGCCCATCAGCCTGGGCCACCCTGGTTCCCTGAAGAAG
GGCAAGACCCCACCTGTGGCTGTAACTTCCCCCATCACTCACACAGCCCAGAGTGCCCTCAAAGTCGCAG
GCAAACCTGAGGGCAAAGCTACAGACAAGGGTAAGCTTGCAGTGAAGAATACTGGGCTCCAACGCTCCTC
CTCTGATGCTGGTCGGGACCGCCTGAGTGATGCTAAGAAGCCCCCCTCGGGCATTGCTCGCCCCTCCACT
TCGGGATCCTTTGGCTACAAGAAGCCTCCTCCTGCCACAGGCACAGCCACTGTCATGCAAACTGGTGGTT
CAGCCACTCTCAGCAAGATCCAGAAGTCCTCAGGCATCCCTGTCAAGCCAGTAAATGGGCGCAAGACTAG
CTTAGATGTTTCCAACAGTGCAGAGCCAGGATTCCTGGCTCCTGGAGCCCGTTCTAACATCCAGTACCGC
AGCCTGCCCCGGCCAGCCAAGTCAAGTTCTATGAGCGTGACCGGCGGGCGGGGTGGACCTCGCCCTGTGA
GCAGCAGCATTGACCCCAGTCTCCTCAGCACCAAGCAGGGAGGCCTTACGCCTTCCAGACTGAAGGAGCC
TACCAAGGTAGCCAGTGGGCGGACCACTCCAGCCCCTGTCAATCAGACAGATCGGGAAAAGGAGAAGGCC
AAAGCCAAGGCAGTGGCCTTGGACTCAGACAACATCTCCTTGAAGAGTATTGGCTCCCCAGAAAGTACTC
CCAAGAACCAAGCAAGCCACCCCACAGCCACCAAGCTGGCAGAGCTGCCACCAACCCCTCTCAGGGCCAC
AGCGAAGAGCTTTGTCAAACCACCCTCACTAGCCAATCTTGACAAGGTCAACTCCAACAGTCTGGATCTA
CCATCATCCAGTGATACCACCCATGCTTCAAAGGTCCCAGATCTGCATGCTACAAGCTCAGCATCTGGGG
GCCCTCTCCCTTCCTGCTTCACCCCCAGTCCGGCACCCATCCTCAATATTAACTCAGCCAGCTTCTCCCA
GGGCCTGGAGCTAATGAGTGGTTTCAGTGTGCCAAAAGAGACCCGCATGTACCCCAAACTCTCAGGCCTG
CACAGGAGCATGGAGTCCCTCCAGATGCCAATGAGCCTCCCCAGTGCCTTCCCCAGCAGTACTCCCGTCC
CCACCCCACCTGCTCCCCCTGCTGCTCCCACAGAAGAAGAGACGGAAGAGCTGACTTGGAGTGGAAGCCC
CAGAGCTGGGCAACTGGACAGTAATCAGCGGGATCGGAACACTCTTCCCAAGAAAGGGCTCAGGTACCAG
CTTCAGTCCCAGGAGGAGACCAAGGAGAGGCGACATTCCCATACCATTGGTGGGCTGCCTGAATCCGATG
ACCAGTCAGAGCTGCCTTCTCCCCCTGCACTTCCCATGTCTCTGAGTGCAAAGGGCCAACTTACCAACAT
AGTGAGTCCCACTGCGGCCACCACGCCAAGAATCACCCGCTCCAACAGCATCCCCACCCACGAGGCGGCC
TTCGAGCTGTACAGCGGCTCCCAAATGGGGAGCACCCTGTCCCTGGCCGAGAGACCCAAGGGAATGATTC
GGTCAGGATCCTTCCGAGACCCCACGGACGATGTTCACGGCTCAGTGCTGTCCCTGGCCTCCAGTGCCTC
CTCCACCTACTCCTCAGCTGAGGAGAGGATGCAATCTGAGCAAATCCGGAAGCTTCGTAGGGAACTGGAA
TCATCCCAGGAAAAAGTGGCCACCTTGACGTCTCAGCTTTCTGCCAATGCTAATCTGGTGGCTGCTTTTG
AGCAGAGCCTGGTGAATATGACATCCCGCCTGCGACACCTGGCAGAGACGGCCGAGGAGAAGGACACTGA
GCTGCTGGATTTGCGAGAAACCATAGACTTTCTGAAGAAAAAGAACTCTGAGGCCCAGGCAGTCATTCAG
GGAGCCCTTAATGCCTCAGAAACCACACCCAAAGAACTTCGGATCAAGAGACAAAACTCCTCAGATAGCA
TCTCAAGCCTCAACAGCATCACTAGCCATTCCAGCATCGGCAGCAGCAAGGATGCTGATGCGAAAAAGAA
GAAAAAAAAGAGTTGGCTTCGAAGTTCCTTCAACAAAGCGTTCAGTATAAAAAAGGGGCCCAAGTCAGCT
TCCTCATACTCGGATATAGAGGAGATTGCTACACCCGACTCTTCAGCCCCCTCATCCCCCAAACTACAGC
ATGGTTCTACAGAGACTGCTTCACCCTCCATCAAGTCCTCCACCTCGTCCTCCGTGGGCACTGATGTCAC
CGAGGGCCCTGCTCACCCAGCCCCCCACACTAGGCTGTTCCATGCAAATGAGGAGGAGGAGCCAGAGAAG
AAGGAGGTATCGGAGCTGCGCTCTGAGCTATGGGAGAAGGAAATGAAGCTTACAGACATCCGCTTGGAGG
CCCTCAACTCTGCCCACCAACTGGATCAGCTTCGGGAGACCATGCACAACATGCAGTTGGAGGTGGACCT
GCTGAAAGCAGAGAATGACCGACTGAAGGTAGCCCCAGGCCCCTCATCAGGCTCCACTCCAGGGCAGGTC
CCTGGATCATCTGCATTATCTTCCCCACGCCGCTCCCTAGGCCTGGCACTCACCCATTCCTTCGGCCCCA
GTCTTGCAGACACAGACCTGTCACCCATGGATGGCATCAGTACTTGTGGTCCAAAGGAGGAAGTGACCCT
CCGGGTGGTGGTGAGGATGCCCCCGCAGCACATCATCAAAGGGGACTTGAAGCAGCAGGAATTCTTCCTG
GGCTGTAGCAAGGTCAGTGGAAAAGTTGACTGGAAGATGCTGGATGAAGCTGTTTTCCAAGTGTTCAAGG
ACTATATTTCTAAAATGGACCCAGCCTCTACCCTGGGACTAAGCACTGAGTCCATCCATGGCTACAGCAT
CAGCCACGTGAAACGAGTGTTGGATGCAGAGCCCCCCGAGATGCCTCCTTGCCGTCGAGGTGTCAATAAC
ATATCAGTCTCCCTCAAAGGTCTGAAGGAGAAATGCGTCGACAGCCTGGTGTTCGAGACGCTGATCCCCA
AGCCGATGATGCAGCACTACATAAGCCTCCTGCTGAAGCACCGGCGCCTCGTCCTCTCGGGCCCCAGCGG
CACGGGCAAGACCTACCTGACCAATCGCTTGGCCGAGTACCTGGTGGAGCGCTCTGGCCGTGAGGTCACA
GAGGGCATCGTCAGCACCTTCAACATGCACCAGCAGTCTTGCAAGGATCTGCAACTGTATCTTTCCAACC
TAGCCAACCAGATAGACCGGGAAACAGGAATTGGGGATGTGCCCCTGGTGATTCTATTGGATGACCTGAG
TGAAGCAGGCTCCATCAGTGAGTTGGTCAATGGGGCCCTCACCTGCAAGTATCATAAATGTCCCTATATT
ATAGGTACCACCAATCAGCCTGTAAAAATGACACCCAACCATGGCTTGCACTTGAGCTTCAGGATGTTGA
CCTTCTCCAACAACGTGGAGCCAGCCAATGGCTTCCTGGTTCGTTACCTGAGGAGGAAGCTGGTAGAGTC
AGACAGCGACATCAATGCCAACAAGGAAGAGCTGCTTCGGGTGCTCGACTGGGTACCCAAGCTGTGGTAT
CATCTCCACACCTTCCTTGAGAAGCACAGCACCTCAGACTTCCTCATCGGCCCTTGCTTCTTTCTGTCGT
GTCCCATTGGCATTGAGGACTTCCGGACCTGGTTCATTGACCTGTGGAACAACTCTATCATTCCCTATCT
ACAGGAAGGAGCCAAGGATGGGATAAAGGTCCATGGACAGAAAGCTGCTTGGGAGGACCCAGTGGAATGG
GTCCGGGACACACTTCCCTGGCCATCAGCCCAACAAGACCAATCAAAGCTGTACCACCTGCCCCCACCCA
CCGTGGGCCCTCACAGCATTGCCTCACCTCCCGAGGATAGGACAGTCAAAGACAGCACCCCAAGTTCTCT
GGACTCAGATCCTCTGATGGCCATGCTGCTGAAACTTCAAGAAGCTGCCAACTACATTGAGTCTCCAGAT
CGAGAAACCATCCTGGACCCCAACCTTCAGGCAACACTTTAA

Translation (1483 aa):
MLHLPLPRSGRTVNFPRSWDESSSISSGLSDASDNLSSEEFNASSSLNSLPSTPTASRRNSTIVLRTDSE
KRSLAESGLSWFSESEEKAPKKLEYDSGSLKMEPGTSKWRRERPESCDDSSKGGELKKPISLGHPGSLKK
GKTPPVAVTSPITHTAQSALKVAGKPEGKATDKGKLAVKNTGLQRSSSDAGRDRLSDAKKPPSGIARPST
SGSFGYKKPPPATGTATVMQTGGSATLSKIQKSSGIPVKPVNGRKTSLDVSNSAEPGFLAPGARSNIQYR
SLPRPAKSSSMSVTGGRGGPRPVSSSIDPSLLSTKQGGLTPSRLKEPTKVASGRTTPAPVNQTDREKEKA
KAKAVALDSDNISLKSIGSPESTPKNQASHPTATKLAELPPTPLRATAKSFVKPPSLANLDKVNSNSLDL
PSSSDTTHASKVPDLHATSSASGGPLPSCFTPSPAPILNINSASFSQGLELMSGFSVPKETRMYPKLSGL
HRSMESLQMPMSLPSAFPSSTPVPTPPAPPAAPTEEETEELTWSGSPRAGQLDSNQRDRNTLPKKGLRYQ
LQSQEETKERRHSHTIGGLPESDDQSELPSPPALPMSLSAKGQLTNIVSPTAATTPRITRSNSIPTHEAA
FELYSGSQMGSTLSLAERPKGMIRSGSFRDPTDDVHGSVLSLASSASSTYSSAEERMQSEQIRKLRRELE
SSQEKVATLTSQLSANANLVAAFEQSLVNMTSRLRHLAETAEEKDTELLDLRETIDFLKKKNSEAQAVIQ
GALNASETTPKELRIKRQNSSDSISSLNSITSHSSIGSSKDADAKKKKKKSWLRSSFNKAFSIKKGPKSA
SSYSDIEEIATPDSSAPSSPKLQHGSTETASPSIKSSTSSSVGTDVTEGPAHPAPHTRLFHANEEEEPEK
KEVSELRSELWEKEMKLTDIRLEALNSAHQLDQLRETMHNMQLEVDLLKAENDRLKVAPGPSSGSTPGQV
PGSSALSSPRRSLGLALTHSFGPSLADTDLSPMDGISTCGPKEEVTLRVVVRMPPQHIIKGDLKQQEFFL
GCSKVSGKVDWKMLDEAVFQVFKDYISKMDPASTLGLSTESIHGYSISHVKRVLDAEPPEMPPCRRGVNN
ISVSLKGLKEKCVDSLVFETLIPKPMMQHYISLLLKHRRLVLSGPSGTGKTYLTNRLAEYLVERSGREVT
EGIVSTFNMHQQSCKDLQLYLSNLANQIDRETGIGDVPLVILLDDLSEAGSISELVNGALTCKYHKCPYI
IGTTNQPVKMTPNHGLHLSFRMLTFSNNVEPANGFLVRYLRRKLVESDSDINANKEELLRVLDWVPKLWY
HLHTFLEKHSTSDFLIGPCFFLSCPIGIEDFRTWFIDLWNNSIIPYLQEGAKDGIKVHGQKAAWEDPVEW
VRDTLPWPSAQQDQSKLYHLPPPTVGPHSIASPPEDRTVKDSTPSSLDSDPLMAMLLKLQEAANYIESPD
RETILDPNLQATL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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