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Report for CCDS5372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5372.1 Public Homo sapiens 7 SP8 24 110 108 CCDS HistoryNCBI Gene:221833Re-query CCDS DB by CCDS ID:5372.1Re-query CCDS DB by GeneID:221833See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5372.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361443.4 ENSP00000354482.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361443.4Link to Ensembl Protein Viewer:ENSP00000354482.4Re-query CCDS DB by Nucleotide ID:ENST00000361443Re-query CCDS DB by Protein ID:ENSP00000354482
Original member Current member NCBI NM_198956.4 NP_945194.1 Accepted alive Link to Nucleotide Sequence:NM_198956.4Link to Protein Sequence:NP_945194.1Re-query CCDS DB by Nucleotide ID:NM_198956Re-query CCDS DB by Protein ID:NP_945194Link to BLAST:NP_945194.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945194.1 490 Q8IXZ3-3 490 100% 0 0

Chromosomal Locations for CCDS 5372.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 20784290 20785762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGCTTGCCGCTACCTGTAATAAGATAGGCAGCCCCAGCCCGTCTCCCTCCTCCCTCTCGGACAGCTCTT
CTTCCTTCGGCAAAGGCTTCCACCCCTGGAAACGCTCCTCGTCCTCTTCTTCCGCCAGCTGCAACGTAGT
GGGTTCCAGTCTCTCAAGCTTCGGCGTGTCCGGGGCCTCCAGGAACGGCGGCTCGTCCTCGGCGGCTGCG
GCGGCCGCGGCAGCAGCCGCGGCTGCCGCGGCCCTGGTGTCCGACTCGTTCAGCTGCGGCGGCTCGCCTG
GCTCCAGCGCCTTCTCCCTCACCTCCAGCAGCGCCGCAGCCGCCGCCGCCGCCGCCGCAGCCGCCGCCTC
CAGCTCGCCCTTCGCCAACGACTACTCTGTTTTCCAGGCCCCCGGAGTTTCCGGGGGCAGCGGCGGCGGC
GGCGGGGGCGGCGGCGGCGGCTCCTCCGCGCACTCGCAGGACGGCTCCCACCAGCCGGTGTTCATCTCCA
AGGTGCACACCTCTGTGGACGGGCTGCAGGGCATCTACCCGCGGGTGGGCATGGCGCACCCGTACGAGTC
GTGGTTTAAGCCCTCGCACCCGGGCCTGGGTGCTGCGGGCGAGGTGGGCTCGGCCGGCGCCTCCAGCTGG
TGGGACGTGGGGGCCGGCTGGATCGACGTGCAGAACCCGAACAGCGCGGCTGCGCTGCCCGGCTCGCTGC
ACCCTGCCGCCGGGGGGCTCCAAACCTCGCTGCACTCGCCGCTCGGAGGCTACAACTCGGATTACTCGGG
CCTGAGTCACTCGGCCTTCAGCAGCGGCGCCTCCTCGCACCTGCTCAGCCCCGCCGGGCAGCACCTCATG
GACGGCTTCAAGCCAGTGCTACCCGGCTCCTACCCGGACTCGGCCCCGTCGCCGCTGGCCGGCGCGGGGG
GCTCCATGTTGAGCGCTGGGCCTTCGGCGCCGCTGGGGGGCTCCCCGCGCTCCTCAGCTCGCCGCTACTC
CGGCCGCGCCACCTGCGACTGCCCCAACTGCCAGGAGGCAGAGCGGCTGGGCCCTGCCGGGGCGAGCTTG
CGGCGCAAGGGCCTGCACAGCTGCCACATCCCGGGCTGCGGCAAGGTGTACGGCAAGACTTCGCACCTCA
AGGCGCACCTGCGCTGGCACACGGGCGAGCGGCCCTTCGTGTGCAACTGGCTTTTCTGCGGCAAGCGCTT
CACGCGCTCCGACGAGCTGCAGCGGCACCTGCGGACCCACACCGGCGAGAAGCGCTTCGCCTGTCCAGTT
TGCAACAAGCGCTTCATGCGCAGCGACCACCTCAGCAAGCACGTGAAGACGCACAGTGGCGGCGGCGGCG
GCGGCGGCTCGGCGGGCTCGGGCAGCGGCGGCAAGAAGGGCAGCGACACCGACAGCGAGCACAGCGCCGC
GGGCAGCCCGCCCTGCCACTCCCCAGAGCTGCTGCAGCCCCCCGAGCCCGGGCACCGCAACGGCCTAGAG
TGA

Translation (490 aa):
MLAATCNKIGSPSPSPSSLSDSSSSFGKGFHPWKRSSSSSSASCNVVGSSLSSFGVSGASRNGGSSSAAA
AAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSAAAAAAAAAAAASSSPFANDYSVFQAPGVSGGSGGG
GGGGGGGSSAHSQDGSHQPVFISKVHTSVDGLQGIYPRVGMAHPYESWFKPSHPGLGAAGEVGSAGASSW
WDVGAGWIDVQNPNSAAALPGSLHPAAGGLQTSLHSPLGGYNSDYSGLSHSAFSSGASSHLLSPAGQHLM
DGFKPVLPGSYPDSAPSPLAGAGGSMLSAGPSAPLGGSPRSSARRYSGRATCDCPNCQEAERLGPAGASL
RRKGLHSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKRFACPV
CNKRFMRSDHLSKHVKTHSGGGGGGGSAGSGSGGKKGSDTDSEHSAAGSPPCHSPELLQPPEPGHRNGLE


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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