NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53721.1 Public Homo sapiens 11 RPUSD4 24 110 108 CCDS HistoryNCBI Gene:84881Re-query CCDS DB by CCDS ID:53721.1Re-query CCDS DB by GeneID:84881See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53721.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000533628.5 ENSP00000433065.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533628.5Link to Ensembl Protein Viewer:ENSP00000433065.1Re-query CCDS DB by Nucleotide ID:ENST00000533628Re-query CCDS DB by Protein ID:ENSP00000433065
Original member Current member NCBI NM_001144827.2 NP_001138299.1 Accepted alive Link to Nucleotide Sequence:NM_001144827.2Link to Protein Sequence:NP_001138299.1Re-query CCDS DB by Nucleotide ID:NM_001144827Re-query CCDS DB by Protein ID:NP_001138299Link to BLAST:NP_001138299.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138299.1 346 Q96CM3-2 346 100% 0 0

Chromosomal Locations for CCDS 53721.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 126203418 126203657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126204231 126204328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126205468 126205539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126205708 126205781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126209521 126209722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126210890 126211055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126211450 126211638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGCGGCGCCCAGGTGGAGCGCGTCGGGCCCCTGGATCCGGGGAAACGGCCAAGGTTGCGGGAGTCTCT
TCACTCTCGTCTCAAAGCCATTTTGTGCCGCTGCCGCTGCCTCTACGGCCATAAATGCCCAGAGATTAGC
GGAGAAGCTCCGAGCCCAGAAACGGGAACAAGACACAAAGAAGGAGCCGGTGTCCACAAACGCTGTTCAG
CGGAGAGTGCAAGAAATAGTGCGGTTCACACGGCAGCTGCAGCGAGTCCACCCCAACGTGCTTGCTAAGG
CACTGACCCGAGGAATTCTCCACCAGGACAAGAACCTTGTGGTCATCAATAAGCCCTACGGTCTCCCTGT
GCATGGTGGCCCTGGGGTCCAGCTCTGCATCACTGATGTACTACCTATCCTGGCAAAGATGCTTCATGGC
CACAAGGCAGAGCCCTTGCATCTGTGCCACCGGCTGGACAAGGAAACCACAGGTGTAATGGTGTTGGCTT
GGGACAAGGACATGGCACATCAAGTCCAAGAGTTGTTTAGAACCCGTCAGGTGGTGAAGAAGTACTGGGC
CATCACTGTGCATGTCCCCATGCCCTCAGCAGGAGTCGTGGACATCCCCATTGTGGAGAAGGAGGCGCAA
GTTGCTGTAACTCAGTACCAGGTGCTCAGCAGCACTCTCTCCTCCGCCCTCGTGGAGCTCCAGCCCATCA
CTGGAATAAAACATCAGCTTCGAGTTCACTTGTCTTTTGGATTGGATTGTCCAATCCTTGGTGATCACAA
GTACTCAGACTGGAATAGGTTGGCCCCCCAGAAGCTGTCTGTGGGCACCCTGAAGAAGCTGGGGCTAGAA
CAGTCGAAGGCCCGCTACATCCCCCTTCACCTGCACGCCCGGCAGCTGATCCTGCCTGCCCTGGGGTCCG
GGAAGGAGGAACTCAACTTGGTCTGCAAACTTCCTCGCTTCTTTGTGCATTCCCTGCACCGCCTGCGTTT
AGAGATGCCAAATGAGGATCAAAATGAGAACAATGAAGCCAAGTGTCTGGGAGCACAGTGA

Translation (346 aa):
MAAPRWSASGPWIRGNGQGCGSLFTLVSKPFCAAAAASTAINAQRLAEKLRAQKREQDTKKEPVSTNAVQ
RRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHG
HKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQ
VAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQKLSVGTLKKLGLE
QSKARYIPLHLHARQLILPALGSGKEELNLVCKLPRFFVHSLHRLRLEMPNEDQNENNEAKCLGAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH