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Report for CCDS53737.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53737.1 Public Homo sapiens 12 TULP3 24 110 108 CCDS HistoryNCBI Gene:7289Re-query CCDS DB by CCDS ID:53737.1Re-query CCDS DB by GeneID:7289See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53737.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397132.6 ENSP00000380321.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397132.6Link to Ensembl Protein Viewer:ENSP00000380321.2Re-query CCDS DB by Nucleotide ID:ENST00000397132Re-query CCDS DB by Protein ID:ENSP00000380321
Original member Current member NCBI NM_001160408.2 NP_001153880.1 Accepted alive Link to Nucleotide Sequence:NM_001160408.2Link to Protein Sequence:NP_001153880.1Re-query CCDS DB by Nucleotide ID:NM_001160408Re-query CCDS DB by Protein ID:NP_001153880Link to BLAST:NP_001153880.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153880.1 501 O75386-2 501 100% 0 0

Chromosomal Locations for CCDS 53737.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 2890948 2890988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2909529 2909580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2920763 2920922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2922262 2922402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2930248 2930345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2931037 2931240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2933418 2933530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2934447 2934561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2937631 2937729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2938114 2938285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2939311 2939424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2940530 2940726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGAGGCTTCGCGCTGCCGGCTCAGTCCCAGCGGCGACAGTGTCTTCCATGAAGAAATGATGAAGATGC
GACAGGCTAAGCTGGATTATCAGAGGCTACTACTTGAGAAGAGGCAAAGGAAAAAGCGCCTTGAGCCATT
TATGGTGCAGCCCAATCCAGAAGCCAGGCTACGTCGGGCAAAGCCAAGGGCCAGTGATGAGCAGACTCCC
TTGGTGAACTGTCATACTCCCCACAGCAATGTCATCTTACATGGTATTGATGGTCCAGCTGCTGTCCTGA
AACCAGACGAAGTTCATGCTCCATCAGTAAGCTCCTCTGTTGTGGAAGAAGATGCTGAAAACACCGTGGA
TACTGCTTCCAAGCCAGGACTTCAGGAGCGTCTCCAAAAGCATGATATCTCTGAAAGTGTGAACTTCGAT
GAGGAGACTGATGGAATATCCCAGTCAGCATGTTTAGAAAGACCCAATTCTGCATCAAGCCAGAATTCAA
CCGATACAGGCACTTCCGGTTCTGCTACTGCCGCCCAACCAGCTGATAACCTCCTGGGAGACATAGACGA
CCTGGAGGACTTTGTGTATAGTCCTGCCCCTCAAGGTGTCACAGTAAGATGTCGGATAATCCGGGATAAA
AGGGGAATGGATCGGGGTCTCTTCCCCACCTACTATATGTACTTGGAAAAAGAAGAAAATCAGAAGATAT
TTCTTCTTGCAGCTAGAAAGCGGAAAAAGAGCAAAACAGCCAACTACCTTATCTCCATTGATCCAGTTGA
TTTATCTCGTGAAGGAGAAAGTTATGTCGGCAAGCTTAGATCCAACCTCATGGGGACCAAGTTTACAGTT
TATGACCGTGGCATCTGCCCCATGAAGGGCCGGGGTTTGGTAGGAGCGGCCCACACCCGGCAGGAGCTGG
CTGCCATCTCCTATGAAACAAACGTACTTGGATTTAAAGGTCCTAGGAAAATGTCTGTGATCATTCCTGG
AATGACACTGAATCATAAGCAGATCCCCTATCAGCCACAAAACAACCATGACAGTTTGCTCTCAAGGTGG
CAGAACAGAACTATGGAAAATCTGGTTGAGCTGCACAACAAGGCCCCCGTCTGGAACAGTGACACTCAGT
CCTATGTCCTCAACTTCCGTGGCCGGGTCACTCAGGCGTCTGTGAAGAACTTCCAGATAGTCCACAAAAA
TGACCCTGATTATATAGTCATGCAGTTTGGACGTGTGGCAGATGACGTGTTCACACTGGATTACAACTAC
CCACTTTGTGCAGTACAGGCCTTTGGCATCGGTCTTTCTAGCTTTGACAAATGTATCCAAACCTTGAGAA
TGCAGGAGCTCTGTGAGCTCCACCGTCAGCACCATTCAGCTGCATCCCTTGTGCACAGAACTGTTTGCCA
GCGTTGGGTGGGACACCCGTGGCGGCTGCTCCCTCAGACCTCCCTTCTGTGGACTGACCTCTCACCTCCG
CCTGTTGTTCCTGCACCACATCAGATAAGCATGTGA

Translation (501 aa):
MEASRCRLSPSGDSVFHEEMMKMRQAKLDYQRLLLEKRQRKKRLEPFMVQPNPEARLRRAKPRASDEQTP
LVNCHTPHSNVILHGIDGPAAVLKPDEVHAPSVSSSVVEEDAENTVDTASKPGLQERLQKHDISESVNFD
EETDGISQSACLERPNSASSQNSTDTGTSGSATAAQPADNLLGDIDDLEDFVYSPAPQGVTVRCRIIRDK
RGMDRGLFPTYYMYLEKEENQKIFLLAARKRKKSKTANYLISIDPVDLSREGESYVGKLRSNLMGTKFTV
YDRGICPMKGRGLVGAAHTRQELAAISYETNVLGFKGPRKMSVIIPGMTLNHKQIPYQPQNNHDSLLSRW
QNRTMENLVELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKNDPDYIVMQFGRVADDVFTLDYNY
PLCAVQAFGIGLSSFDKCIQTLRMQELCELHRQHHSAASLVHRTVCQRWVGHPWRLLPQTSLLWTDLSPP
PVVPAPHQISM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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