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Report for CCDS53777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53777.1 Public Homo sapiens 12 PDZRN4 24 110 108 CCDS HistoryNCBI Gene:29951Re-query CCDS DB by CCDS ID:53777.1Re-query CCDS DB by GeneID:29951See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53777.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402685.7 ENSP00000384197.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402685.7Link to Ensembl Protein Viewer:ENSP00000384197.2Re-query CCDS DB by Nucleotide ID:ENST00000402685Re-query CCDS DB by Protein ID:ENSP00000384197
Original member Current member NCBI NM_001164595.2 NP_001158067.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164595.2Link to Protein Sequence:NP_001158067.1Re-query CCDS DB by Nucleotide ID:NM_001164595Re-query CCDS DB by Protein ID:NP_001158067Link to BLAST:NP_001158067.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158067.1 1036 Q6ZMN7-1 1036 100% 0 0

Chromosomal Locations for CCDS 53777.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 41188456 41189103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41191458 41191544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41194081 41194188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41506456 41506712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41509811 41509913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41552656 41552754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41555698 41555760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41563548 41563649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41567783 41567899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41572364 41573890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3111 nt):
ATGGGCTTTGCCCTGGAGCGCTTCGCAGAAGCCGTGGACCCGGCTCTGGAGTGCAAACTGTGCGGCCAGG
TGCTTGAAGAGCCCCTGTGCACGCCGTGCGGGCACGTCTTCTGCGCCAGCTGCCTGTTGCCCTGGGCGGT
GCGGAGGCGCCGGTGCCCGCTGCAGTGCCAGCCCTTGGCGCCCGGCGAGCTGTACCGGGTGCTGCCGCTG
CGCAGCCTCATCCAGAAGCTGCGAGTCCAGTGCGACTACCGCGCCCGCGGCTGCGGCCACTCGGTCAGGC
TGCACGAGCTGGAGGCGCACGTCGAGCACTGCGACTTCGGCCCTGCCCGCCGGCTCCGCAGCCGCGGGGG
CTGCGCTTCGGGGCTGGGCGGTGGTGAGGTGCCCGCGCGGGGGGGCTGCGGTCCGACACCCAGGGCTGGC
CGGGGCGGGGGCGCGCGCGGGGGGCCGCCGGGCGGCCGCTGGGGCCGCGGGCGGGGACCCGGGCCTCGGG
TCCTCGCCTGGAGGCGGCGCGAGAAGGCGCTGCTGGCGCAGCTCTGGGCGCTGCAGGGCGAGGTGCAGCT
CACGGCGCGCAGGTACCAGGAGAAGTTCACCCAATACATGGCTCACGTCCGCAACTTCGTCGGCGACCTC
GGTGGCGGCCACCGCAGGGATGGAGAGCATAAGCCATTCACTATTGTGTTAGAAAGAGAAAATGACACTT
TGGGATTCAATATTATAGGAGGTCGACCAAATCAGAATAATCAGGAAGGAACATCGACTGAAGGAATTTA
CGTTTCAAAAATTTTAGAAAATGGACCTGCTGACAGAGCAGATGGCCTGGAGATTCATGACAAAATCATG
GAGGTCAATGGGAAGGATCTTTCAAAGGCCACTCATGAAGAGGCAGTGGAAGCTTTTCGCAATGCCAAGG
AGCCCATTGTGGTGCAGGTGTTAAGGCGAACACCTCTTAGTAGACCAGCCTATGGGATGGCTTCAGAAGT
GCAGCTTATGAATGCCAGCACTCAGACGGACATCACCTTCGAACACATCATGGCTCTGGCCAAGCTTCGT
CCACCTACCCCTCCAGTGCCAGACATCTGTCCATTCCTGCTCTCAGACAGCTGCCATTCTCTACATCCAA
TGGAGCATGAATTTTATGAGGACAATGAGTATATTTCCAGCTTGCCTGCTGATGCAGACAGAACAGAAGA
CTTTGAATATGAGGAGGTCGAGTTGTGTCGTGTTAGCAGTCAAGAGAAGCTGGGCCTGACAGTCTGTTAC
CGAACAGATGATGAAGAAGACACCGGCATTTATGTCAGCGAGGTTGACCCAAATAGCATTGCTGCCAAAG
ACGGCCGGATTCGAGAAGGGGATCGGATTTTGCAAATAAATGGGGAAGATGTCCAGAATCGAGAAGAAGC
AGTGGCCTTGCTGTCTAACGATGAGTGTAAGAGAATCGTGCTGCTTGTTGCAAGGCCAGAGATTCAGCTG
GATGAAGGCTGGCTGGAAGATGAAAGGAATGAATTCTTAGAGGAGTTAAACTTGGAGATGTTGGAAGAAG
AGCATAATGAAGCAATGCAGCCCACTGCCAATGAGGTGGAGCAGCCAAAAAAGCAAGAAGAAGAAGAAGG
CACAACAGACACTGCAACATCCTCATCCAACAACCATGAGAAGGACAGTGGAGTAGGACGTACAGATGAA
AGCTTGCGAAATGATGAGAGCTCAGAGCAGGAGAATGCAGCCGAGGACCCCAATAGCACATCTTTGAAGA
GCAAGAGAGACCTGGGGCAGAGCCAAGACACTCTGGGAAGTGTTGAACTTCAGTACAATGAGAGCCTCGT
ATCTGGTGAATACATTGACTCAGACTGCATTGGCAACCCAGATGAGGACTGTGAAAGATTCAGGCAGCTC
TTGGAGCTCAAATGCAAGATTCGAAATCATGGAGAGTATGACCTGTATTACTCAAGCAGCACAATTGAAT
GCAATCAAGGGGAGCAAGAGGGAGTGGAGCATGAGCTACAGTTGCTTAATGAAGAACTGAGAAACATTGA
GCTTGAGTGTCAGAATATCATGCAGGCTCACAGGCTCCAGAAAGTGACAGACCAGTATGGAGACATCTGG
ACATTGCATGATGGAGGATTCCGGAATTATAACACCAGCATAGATATGCAAAGGGGAAAGCTAGATGACA
TCATGGAGCATCCAGAAAAGTCTGACAAGGACAGTTCTAGTGCTTACAACACAGCTGAGAGCTGCAGAAG
TACTCCGCTCACTGTAGACCGTTCCCCTGACAGTTCCCTTCCAAGGGTGATCAACCTCACCAATAAGAAA
AACCTGAGAAGCACAATGGCAGCCACCCAGTCCTCTTCCGGACAGAGCAGTAAAGAGTCGACCTCCACCA
AAGCCAAAACCACTGAGCAAGGTTGTAGCGCTGAAAGCAAGGAGAAGGTTTTAGAAGGCAGCAAGCTTCC
TGATCAAGAGAAGGCAGTCAGCGAACACATCCCTTACCTCTCTCCTTACCACAGCTCCTCATATAGATAT
GCAAACATCCCAGCACACGCCCGGCATTATCAAAGCTACATGCAGTTAATTCAACAGAAATCTGCAGTCG
AGTATGCTCAGAGTCAGCTCAGCTTGGTGAGCATGTGCAAGGAGTCTCAGAAGTGTTCAGAGCCCAAGAT
GGAATGGAAGGTGAAAATTAGGAGCGACGGGACACGGTACATCACAAAGAGACCCGTGCGAGACCGAATC
CTGAAGGAACGTGCCTTAAAGATCAAGGAAGAGCGGAGTGGCATGACCACAGACGATGACACCATGAGCG
AGATGAAAATGGGGCGCTACTGGAGCAAAGAGGAGAGAAAGCAGCACCTGGTTAGGGCCAAAGAGCAGCG
CCGTCGCCGTGAGTTCATGATGCGAAGCAGGTTAGAGTGTCTCAAGGAGAGCCCTCAGAGCGGCAGTGAG
GGCAAGAAGGAGATCAATATCATTGAACTGAGTCACAAAAAGATGATGAAAAAGAGAAACAAGAAAATTT
TGGACAACTGGATGACAATCCAAGAACTGATGACCCATGGGGCCAAGTCTCCAGATGGCACGAGAGTCCA
TAATGCCTTCTTGTCGGTGACCACTGTATGA

Translation (1036 aa):
MGFALERFAEAVDPALECKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCPLQCQPLAPGELYRVLPL
RSLIQKLRVQCDYRARGCGHSVRLHELEAHVEHCDFGPARRLRSRGGCASGLGGGEVPARGGCGPTPRAG
RGGGARGGPPGGRWGRGRGPGPRVLAWRRREKALLAQLWALQGEVQLTARRYQEKFTQYMAHVRNFVGDL
GGGHRRDGEHKPFTIVLERENDTLGFNIIGGRPNQNNQEGTSTEGIYVSKILENGPADRADGLEIHDKIM
EVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLR
PPTPPVPDICPFLLSDSCHSLHPMEHEFYEDNEYISSLPADADRTEDFEYEEVELCRVSSQEKLGLTVCY
RTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSNDECKRIVLLVARPEIQL
DEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGRTDE
SLRNDESSEQENAAEDPNSTSLKSKRDLGQSQDTLGSVELQYNESLVSGEYIDSDCIGNPDEDCERFRQL
LELKCKIRNHGEYDLYYSSSTIECNQGEQEGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIW
TLHDGGFRNYNTSIDMQRGKLDDIMEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRVINLTNKK
NLRSTMAATQSSSGQSSKESTSTKAKTTEQGCSAESKEKVLEGSKLPDQEKAVSEHIPYLSPYHSSSYRY
ANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKMEWKVKIRSDGTRYITKRPVRDRI
LKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSE
GKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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