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Report for CCDS53846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53846.1 Public Homo sapiens 12 GOLGA3 24 110 108 CCDS HistoryNCBI Gene:2802Re-query CCDS DB by CCDS ID:53846.1Re-query CCDS DB by GeneID:2802See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53846.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000545875.4 ENSP00000442603.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545875.4Link to Ensembl Protein Viewer:ENSP00000442603.1Re-query CCDS DB by Nucleotide ID:ENST00000545875Re-query CCDS DB by Protein ID:ENSP00000442603
Original member Current member NCBI NM_001172557.2 NP_001166028.1 Accepted alive Link to Nucleotide Sequence:NM_001172557.2Link to Protein Sequence:NP_001166028.1Re-query CCDS DB by Nucleotide ID:NM_001172557Re-query CCDS DB by Protein ID:NP_001166028Link to BLAST:NP_001166028.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166028.1 1134 Q08378-4 1134 100% 0 0

Chromosomal Locations for CCDS 53846.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 132784026 132784307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132786339 132786555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132786693 132786787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132789027 132789290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132791216 132791293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132795852 132796220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132796539 132796700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132798340 132798477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132801767 132801969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132804716 132805022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132807177 132807288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132807891 132808549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132813307 132813419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132816540 132816812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132821996 132822128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3405 nt):
ATGGACGGCGCGTCGGCCGAGCAAGATGGCCTCCAGGAGGACAGATCCCACAGTGGCCCCTCGTCTCTCC
CCGAGGCCCCACTGAAGCCCCCGGGCCCACTGGTGCCACCTGACCAGCAGGACAAAGTCCAGTGTGCCGA
GGTAAACAGAGCATCCACGGAAGGGGAAAGCCCGGATGGACCTGGCCAGGGAGGCCTCTGTCAGAACGGG
CCAACGCCACCCTTCCCAGACCCTCCGTCGTCTCTCGATCCCACCACAAGCCCAGTGGGCCCTGATGCCT
CTCCAGGTGTGGCTGGTTTCCATGACAACCTAAGGAAGTCTCAGGGAACTAGTGCTGAGGGCAGTGTTAG
AAAAGAAGCTTTGCAGTCTCTCAGACTCAGTCTTCCTATGCAAGAAACGCAACTGTGCTCTACAGATTCT
CCCCTGCCCCTGGAGAAGGAGGAGCAGGTCCGACTTCAGGCTCGGAAGTGGCTGGAAGAGCAGCTCAAAC
AGTACAGGGTGAAGCGCCAGCAGGAGAGGTCCAGTCAACCTGCAACCAAAACGAGACTTTTTAGCACGCT
TGATCCTGAGCTCATGTTAAACCCAGAAAACTTACCAAGGGCCAGTACCCTGGCTATGACAAAAGAATAT
TCCTTCCTGCGCACCAGTGTCCCTCGGGGGCCTAAGGTGGGCAGCCTGGGGCTTCCGGCACATCCTAGGG
AGAAAAAAACTTCCAAATCAAGCAAAATCCGGTCTCTGGCCGATTACAGAACTGAAGATTCAAATGCGGG
GAATTCTGGGGGAAATGTCCCGGCTCCCGATTCTACCAAGGGTTCCCTGAAGCAGAACAGAAGCAGTGCG
GCGTCCGTTGTGTCTGAGATCAGCCTGTCCCCCGACACTGACGACCGTCTGGAGAACACCTCCCTGGCTG
GAGACAGCGTGTCTGAGGTGGATGGAAATGACAGCGACAGCTCATCGTACAGCAGCGCCTCCACCCGAGG
GACCTATGGCATTCTGTCGAAGACAGTGGGCACGCAGGACACCCCCTATATGGTCAACGGCCAGGAGATT
CCTGCGGATACCCTGGGCCAGTTCCCCTCCATTAAGGACGTCCTCCAGGCCGCAGCCGCTGAGCACCAAG
ACCAGGGGCAGGAGGTCAACGGGGAGGTGCGGAGTCGGAGAGACAGCATCTGCAGCAGCGTGTCCTTGGA
GAGCTCTGCAGCAGAAACACAGGAGGAGATGCTGCAGGTGCTCAAAGAGAAAATGCGACTCGAAGGACAG
CTGGAAGCCTTGTCACTGGAGGCGAGTCAGGCACTTAAAGAGAAGGCTGAGCTGCAGGCCCAGCTGGCCG
CCCTCAGCACGAAGCTGCAGGCGCAGGTGGAGTGCAGCCACAGCAGCCAGCAGCGGCAGGATTCGCTGAG
CTCGGAGGTGGACACCCTGAAGCAGTCGTGCTGGGACCTGGAGCGAGCCATGACTGACCTGCAGAACATG
CTGGAGGCAAAAAATGCCAGCCTGGCGTCGTCCAACAACGACTTGCAGGTGGCCGAGGAGCAGTACCAGA
GGCTTATGGCCAAGGTAGAGGACATGCAGAGGAGCATGCTCAGCAAGGACAACACAGTGCACGACCTGCG
ACAGCAGATGACAGCCTTGCAGAGCCAGCTTCAGCAGGTGCAGCTGGAGCGGACGACGCTGACCAGCAAG
CTGAAGGCGTCGCAGGCGGAGATCTCGTCCCTGCAGAGTGTCCGGCAGTGGTACCAGCAGCAGCTCGCCC
TGGCACAGGAGGCCCGCGTCAGGCTGCAGGGTGAGATGGCCCACATCCAGGTTGGACAGATGACCCAGGC
AGGTCTCCTGGAGCACCTGAAACTCGAGAATGTGTCCCTGTCCCAGCAGCTGACGGAAACTCAGCACAGG
TCCATGAAGGAGAAGGGGCGCATCGCGGCACAGCTGCAGGGCATTGAGGCTGACATGTTGGATCAGGAAG
CAGCCTTCATGCAGATTCAGGAGGCAAAGACGATGGTGGAGGAGGACCTTCAGAGGAGGCTGGAAGAGTT
TGAAGGTGAGAGGGAGCGGCTGCAGAGGATGGCGGACTCGGCGGCATCCCTGGAGCAGCAGCTGGAGCAG
GTGAAGTTGACTTTACTCCAGCGAGACCAGCAGCTTGAGGCTTTGCAGCAGGAGCACCTGGACCTGATGA
AACAGCTCACCTTGACTCAGGAGGCTCTGCAGAGCAGGGAGCAGTCCCTCGATGCCCTGCAGACACACTA
CGATGAGCTGCAGGCCAGGCTGGGGGAGCTGCAGGGCGAGGCCGCCTCCAGGGAGGACACGATCTGCCTC
CTGCAGAACGAGAAGATCATCTTGGAGGCGGCTTTGCAGGCGGCCAAGAGTGGCAAGGAGGAGCTTGACA
GAGGAGCAAGACGCTTGGAAGAAGGTACCGAGGAAACGTCGGAAACTTTAGAGAAGTTAAGAGAAGAATT
AGCTATCAAATCCGGCCAGGTGGAACACCTGCAGCAGGAGACTGCTGCTCTGAAAAAGCAAATGCAAAAA
ATAAAGGAACAGTTTCTCCAACAAAAGGTGATGGTGGAGGCCTACCGGCGCGACGCCACCTCCAAAGACC
AGCTCATCAGTGAGCTGAAAGCCACCAGGAAGAGGCTGGACTCGGAGCTGAAGGAGCTGCGGCAGGAGCT
GATGCAAGTGCACGGGGAGAAGCGGACTGCCGAGGCGGAGCTCTCGCGCCTGCACAGAGAGGTGGCCCAG
GTCCGTCAGCACATGGCGGACCTTGAAGGGCATCTCCAGTCGGCGCAGAAGGAGCGAGACGAGATGGAAA
CACACTTGCAGTCGTTGCAGTTCGATAAGGAGCAGATGGTCGCGGTCACAGAGGCCAATGAGGCGCTGAA
GAAACAAATCGAAGAGTTGCAGCAAGAGGCCCGGAAGGCCATCACGGAACAGAAGCAGAAGATGAGGCGG
CTGGGCTCAGACTTGACCAGCGCCCAGAAGGAGATGAAGACCAAACATAAGGCCTACGAGAACGCCGTGG
GCATCCTCAGCCGCCGCCTGCAGGAGGCCCTCGCGGCCAAGGAGGCTGCGGACGCGGAGCTGGGCCAGCT
CCGAGCCCAGGGTGGCAGCAGTGACAGCAGCCTGGCTCTACATGAAAGGATCCAGGCCCTGGAGGCGGAG
CTGCAGGCTGTCAGTCATAGCAAGACGCTGCTGGAAAAGGAACTGCAGGAGGTCATAGCGCTGACCAGCC
AGGAGCTGGAGGAGTCCCGGGAGAAGGTGCTGGAGCTGGAGGACGAGGTGAGGCCTGGCCATCTGCTGTG
GCGGCAGCGTGGGGCAGGTCACGTGAGCCCTGGACATGCCGCCACGCGTGAGACCCGAAGAACAAAACTT
CACCGTGTGCCCAGCGTTGCTACTTTTGGTGTTGCCACCTTCTGA

Translation (1134 aa):
MDGASAEQDGLQEDRSHSGPSSLPEAPLKPPGPLVPPDQQDKVQCAEVNRASTEGESPDGPGQGGLCQNG
PTPPFPDPPSSLDPTTSPVGPDASPGVAGFHDNLRKSQGTSAEGSVRKEALQSLRLSLPMQETQLCSTDS
PLPLEKEEQVRLQARKWLEEQLKQYRVKRQQERSSQPATKTRLFSTLDPELMLNPENLPRASTLAMTKEY
SFLRTSVPRGPKVGSLGLPAHPREKKTSKSSKIRSLADYRTEDSNAGNSGGNVPAPDSTKGSLKQNRSSA
ASVVSEISLSPDTDDRLENTSLAGDSVSEVDGNDSDSSSYSSASTRGTYGILSKTVGTQDTPYMVNGQEI
PADTLGQFPSIKDVLQAAAAEHQDQGQEVNGEVRSRRDSICSSVSLESSAAETQEEMLQVLKEKMRLEGQ
LEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNM
LEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSK
LKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHR
SMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQ
VKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICL
LQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQK
IKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQ
VRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRR
LGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAE
LQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDEVRPGHLLWRQRGAGHVSPGHAATRETRRTKL
HRVPSVATFGVATF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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