NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5385.1 Public Homo sapiens 7 FAM221A 24 110 108 CCDS HistoryNCBI Gene:340277Re-query CCDS DB by CCDS ID:5385.1Re-query CCDS DB by GeneID:340277See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5385.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344962.9 ENSP00000342576.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344962.9Link to Ensembl Protein Viewer:ENSP00000342576.4Re-query CCDS DB by Nucleotide ID:ENST00000344962Re-query CCDS DB by Protein ID:ENSP00000342576
Original member Current member NCBI NM_199136.5 NP_954587.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199136.5Link to Protein Sequence:NP_954587.2Re-query CCDS DB by Nucleotide ID:NM_199136Re-query CCDS DB by Protein ID:NP_954587Link to BLAST:NP_954587.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954587.2 298 A4D161-1 298 100% 0 0

Chromosomal Locations for CCDS 5385.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23680219 23680283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23684499 23684672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23689269 23689459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23691390 23691596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23698192 23698299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23700786 23700868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23702096 23702164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGAGCGGTTGACGTTGCCTCTCGGCGGCGCGGCGGCGGTGGACGAGTACCTGGAGTACCGGAGAATTG
TTGGTGAGGATGATGGAGGGAAACTTTTTACTCCTGAAGAATATGAAGAATACAAAAGAAAAGTTTTACC
TCTGCGCTTACAAAACAGATTATTTGTGAGCTGGCGGTCACCAACAGGGATGGATTGTAAACTTGTGGGC
CCAGAGACACTGTGTTTTTGTACACATAGGTATAAACAACATAAAACTGACTTGGAAGCGATTCCTCAGC
AGTGCCCCATTGATCTGCCCTGCCAAGTGACTGGCTGCCAGTGCAGGGCTTACCTTTATGTCCCCTTGAA
TGGTAGCCAGCCCATTCGCTGCAGGTGCAAACACTTTGCTGATCAGCACAGTGCTGCGCCTGGCTTTACA
TGCAATACATGTTCCAAGTGTTCAGGATTCCATAGCTGCTTCACTTGTGCTTGTGGTCAGCCTGCATATG
CCCATGACACAGTAGTGGAAACTAAGCAAGAAAGATTGGCTCAGGAAAAACCAGTGGGACAGGACATTCC
TTATGCAGCCATGGGAGGATTAACTGGTTTCAGCTCGCTGGCGGAAGGCTACATGCGGTTAGATGACAGT
GGGATTGGTGTACCTTCAGTTGAATTTTTAGAATCTCCCATTACGGCAGTAGACAGCCCATTCCTAAAAG
CATTTCAAGCATCATCTAGTTCTTCTCCAGAAACGTTAACAGATGTAGGTACAAGTAGTCAAGTTTCTTC
ATTAAGGAGACCTGAAGAGGATGATATGGCTTTCTTTGAAAGACGATACCAGGAAAGGATGAAAATGGAA
AAGGCTGCTAAGTGGAAAGGAAAAGCTCCATTGCCATCAGCTACAAAACCTTCATGA

Translation (298 aa):
MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRSPTGMDCKLVG
PETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFT
CNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEKPVGQDIPYAAMGGLTGFSSLAEGYMRLDDS
GIGVPSVEFLESPITAVDSPFLKAFQASSSSSPETLTDVGTSSQVSSLRRPEEDDMAFFERRYQERMKME
KAAKWKGKAPLPSATKPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH